Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi88g00081 ATGAAGTGTTTGCGCGAGAAAGACTATGGTCTATTTTCTGCTCATCCAACATCCCACAATGTTCTTGGATGCCAATCATGGGGGACTTCTTCTGAATCTGAAGTCCAACAATCATCTATGTCAAATAGCTTGAGCTTGAAAGTTGATGTTCTGCCACAACAATGCCACAAGAGCAAGGCACTGAGTTTCCAAATCCAAGAACAGGATTCATCTTCTACTCAATCGAGCGGTCAATCTTATCCTGAAGTTGGTTCAGCACAATCAGGTCAAATTCCTTTCCAGCATAGTTCTTCTACTGGCTCAACATTTAGTAGAAATGAGAAGAGTATGGGATGTCTCATCAGGTCACCTATGGGGAGTCAGGATTTCTCCTTCCCTCCAATACTGGATTACAACCAATCACTTGCTCATATGGCTTTCCACTATGCTGATCCATGCTATAGTGGCCTACTAGCTGCTGCATATGGCCCACAGTCTAAGTTAATGGGAACTGCTCATGTTCGAATTCCTCTACCATCTGATCTTACAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGAGCTAAACTTGAAGCACATAACAAACTCATCAAGGATAGGAAACCATACCTTCATGAGTCCCGCCATAAACATGCATTGAAGAGAGCTAGGGGTGCTGGTGGCCGCTTTCTCAATACCAAAAAGCTCCAAGAATCAAAGCTCACTTCACCAAACCATGGCCTAAATGTTTCTTCCACCTCTACTGGTTTGAATTTGGGTGGAAATATGCCAGAATCTAAAATGCATCACAGAGAAAACTACACCGACGGTGCTTCAACCACCACCTGTTCTGATGTCACATATGCATCTAATAGGAATGAAATCTTCCAGCAACAGGATTCAGATTTCAGGTTTTGTGGTTACTCTTCTCACGCTGGGAGAAACATGCAGGATTATACAGCTGATAAGGGTGGTGGTGTGAATCAACATCGCCGTTTATCTGTCCTCATGTGA 1023 0.4321 MKCLREKDYGLFSAHPTSHNVLGCQSWGTSSESEVQQSSMSNSLSLKVDVLPQQCHKSKALSFQIQEQDSSSTQSSGQSYPEVGSAQSGQIPFQHSSSTGSTFSRNEKSMGCLIRSPMGSQDFSFPPILDYNQSLAHMAFHYADPCYSGLLAAAYGPQSKLMGTAHVRIPLPSDLTEEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHKHALKRARGAGGRFLNTKKLQESKLTSPNHGLNVSSTSTGLNLGGNMPESKMHHRENYTDGASTTTCSDVTYASNRNEIFQQQDSDFRFCGYSSHAGRNMQDYTADKGGGVNQHRRLSVLM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi88g00081 340 Gene3D - 176 237 - -
Sebi88g00081 340 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 178 233 IPR001289 GO:0003700|GO:0006355
Sebi88g00081 340 PRINTS CCAAT-binding transcription factor subunit B signature 210 233 IPR001289 GO:0003700|GO:0006355
Sebi88g00081 340 PRINTS CCAAT-binding transcription factor subunit B signature 179 201 IPR001289 GO:0003700|GO:0006355
Sebi88g00081 340 MobiDBLite consensus disorder prediction 66 104 - -
Sebi88g00081 340 MobiDBLite consensus disorder prediction 242 261 - -
Sebi88g00081 340 SMART cbf3 175 236 IPR001289 GO:0003700|GO:0006355
Sebi88g00081 340 ProSitePatterns NF-YA/HAP2 subunit signature. 181 201 IPR018362 GO:0003677|GO:0016602
Sebi88g00081 340 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 30 302 IPR001289 GO:0003700|GO:0006355
Sebi88g00081 340 ProSiteProfiles NF-YA/HAP2 family profile. 176 236 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi88g00081 Sebi-Chr88 1534295 1537136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi88g00081 14 333 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.249 3.05e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sebi88g00081 CBFB_NFYA 4.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi88g00081 K08064 - gmx:100500765 398.282