Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi88g00075 ATGAGTGATCAGCTTTTGGCTAATGAGCTTCCATCATTTGCCTCAGTACCATATCCACCATCTGATGGATTCAATCTAGTTGAACAGAACAGTGGACAGTTTTTTGTGACAGGAGTTTACGGAAATTACAGCAATCTGGAAAGCTCTCCCGCTTATGCGGAGAAACTTGTGTGTCAGCAAATGGATACCCTACTTGGTTTATTAGATGACACAAATGATGCAAATAACTTAAATTCAAAGCAAAAAAATAATGGCTCTTTGCAACATATTAATACCTTTGATATGGGAGATAACATAATCTCCAGGCCACCTGGTTTGTCACTTGATGAGAGAATGTTGAGGGCTTTGTCCTTCTTTAAGGAATCTGCTGGTGGGGGAATACTGGCACAAGTTTGGGTACCCTTAAAGCATGGTAGCCAAGTCATCTTAAGCACGAGTGAGCAACCATATTTACTAGATCAAATGCTTGCAGGGTATCGTGAAGTGTCAAGGACATATACATTTTCTGCAGAAGGAAAACCAGGTTGTTTCCCTGGACTTCCTGGTCGTGTGTTTATCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTACAGTAAGAGTGAGTACTTGAGGGCTGAGCATGCAAAAAATCACAAGGTTCGTGGATCAATCGCTTTTCCCATATTTGATGTGCACTCCGAACTGCCATGCTGTGCTGTACTGGAACTTGTTACTACAAAGGAAAAGCCTGATTTTGACAAAGAATTGGAAATTGTTTGTCATGCACTCCAGCTCGTAAATTTAAGGACTACCATGCCTCTTCGACTTCTTCCTGAGTGTCTTTCAAACAATAAAAGAGCTGCTTTAATGGAAATAATTGATGTGTTACGATCTGTGTGTCATGCACATAGATTGCCGCTGGCACTGACATGGATTCCTTGTCATTACACTGAGGGCACAAGAGGTGAAGCTACAAAGTTACAAATTAAAGAGGGTCGTTCAAGTTCTAGTGATAAAAGCATACTGTGCATCGAAGAATCAGCTTGCTATATAACTGATAGAGTGATGGAAGGATTTGTTCGTGCATGCATTGAACATCATCTTGAAGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAGGAATACGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTACAATTTGAATGCTGCAGTTGCAATTAGGCTAAGAAGTACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAGAGGGAGTTCAGAACAGCAACTTCTATTAGACAATCTCTCAGGTACCATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCGGATGCCGAATTATCAGGAATAGAAAGTTCACAAGTGGGGTTTGAAAAGAAAAATGCCCCCAGTTTTTTTCCTTTGTCTAGGGGAAACTCTCAAATACCATTAATAAATGGTAACCATGATTCTGTCCAGAAGATGTCATTGAAGGCATCTAACCTAAGAAACAATGGAAGTGAGCCTTCACGTAACCAGGAAGGAAATGGATCAAAAAGGCAGGTTGAGAAAAATAGAAGTACATCAGAGAAGATTGTTAGCTTGAGTGTTCTTCAACAATACTTTTCTGGTAGTCTGAAGAATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCATCATGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCATTGAAGAAAATACAAACTGTGCTTGACTCTGTCCAGGGAGTGGAAGGTGCATTGAAGTTTGATCCCTTGGTGGGAGCTTTTGTGGCAGGAGGGTCAATCATCCAAGAGATTGATGCACATAAAAGTCTTCTATTCCCTGAGAAAAGTTCTGTAAAAGACCCTAGGCCTATTACACAAGATGCAGTCTCAGTACCGCATGCACCTTGTAGTGAAGGTGAGAACTCAGCAATTAAGCTGGAGAGACAATTGAAGAAAACCAAGTCTTCTTCCATTGATGGTAGTGAAGATTCAAAATCAATGGCAATGGATGACGGGTCTTGCCAGCCAGCACAGGATTGTCTAGAACAACCTTGTTCGGGCTCCATTCTTGCAAAAGAAGTGGATAAATGTGTTCTGAGAAACAATCCAAGCTCCTTGATTGCTGATGGTATGGACATTTTTGAGGACAGGGATGATGAGGTTGTTGAACTTAACCACCCTACTTCTTCAAGCTTGACAGACTCATCTAATGGCTCTGGTTCAATGATGCATGATACCTCATCAGGTTCTCAGAGCTTTGAGAATCAGAAGCAGCCCAAAGACAAATCAACTATCGTTGATAGTGGGTCAAAAATTATTGTCAAAGCTACCTATGGAGAAGACACCGTTCGTTTCAAGTTTGATCCATGTGCAGGTTGTTTCAAGCTATATGAAGAAGTTGCAACAAGATTCAAACTACAAAATGGATCATTCCAGCTCAAGTATCTAGATGATGAAGAGGAATGGGTGATGTTGATGAATGACTCAGATTTGCAAGAGTGTATCGATATAATGGATGATATCGGCACGCGAAGTGTGAGGTTTCTTGTTCGTGATATGCCTTGTGTTTTTGGCAGCTCTGGCAGTAGCAGTAGCTACTTGGGAGGCAGCTCCTAG 2694 0.4094 MSDQLLANELPSFASVPYPPSDGFNLVEQNSGQFFVTGVYGNYSNLESSPAYAEKLVCQQMDTLLGLLDDTNDANNLNSKQKNNGSLQHINTFDMGDNIISRPPGLSLDERMLRALSFFKESAGGGILAQVWVPLKHGSQVILSTSEQPYLLDQMLAGYREVSRTYTFSAEGKPGCFPGLPGRVFISKVPEWTSNVGYYSKSEYLRAEHAKNHKVRGSIAFPIFDVHSELPCCAVLELVTTKEKPDFDKELEIVCHALQLVNLRTTMPLRLLPECLSNNKRAALMEIIDVLRSVCHAHRLPLALTWIPCHYTEGTRGEATKLQIKEGRSSSSDKSILCIEESACYITDRVMEGFVRACIEHHLEEGKGIAGKALQSNHPFFYPDVKEYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICRSLRTVSDAELSGIESSQVGFEKKNAPSFFPLSRGNSQIPLINGNHDSVQKMSLKASNLRNNGSEPSRNQEGNGSKRQVEKNRSTSEKIVSLSVLQQYFSGSLKNAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGALKFDPLVGAFVAGGSIIQEIDAHKSLLFPEKSSVKDPRPITQDAVSVPHAPCSEGENSAIKLERQLKKTKSSSIDGSEDSKSMAMDDGSCQPAQDCLEQPCSGSILAKEVDKCVLRNNPSSLIADGMDIFEDRDDEVVELNHPTSSSLTDSSNGSGSMMHDTSSGSQSFENQKQPKDKSTIVDSGSKIIVKATYGEDTVRFKFDPCAGCFKLYEEVATRFKLQNGSFQLKYLDDEEEWVMLMNDSDLQECIDIMDDIGTRSVRFLVRDMPCVFGSSGSSSSYLGGSS 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi88g00075 897 PANTHER PROTEIN NLP8 75 890 IPR045012 GO:0003700
Sebi88g00075 897 SMART PB1_new 797 879 IPR000270 GO:0005515
Sebi88g00075 897 MobiDBLite consensus disorder prediction 752 790 - -
Sebi88g00075 897 ProSiteProfiles PB1 domain profile. 797 879 IPR000270 GO:0005515
Sebi88g00075 897 CDD PB1_NLP 798 878 IPR034891 -
Sebi88g00075 897 Pfam PB1 domain 800 878 IPR000270 GO:0005515
Sebi88g00075 897 Pfam RWP-RK domain 543 590 IPR003035 -
Sebi88g00075 897 MobiDBLite consensus disorder prediction 511 537 - -
Sebi88g00075 897 Gene3D - 793 877 - -
Sebi88g00075 897 ProSiteProfiles RWP-RK domain profile. 522 610 IPR003035 -
Sebi88g00075 897 MobiDBLite consensus disorder prediction 647 701 - -
Sebi88g00075 897 MobiDBLite consensus disorder prediction 670 685 - -
Sebi88g00075 897 MobiDBLite consensus disorder prediction 511 526 - -
Sebi88g00075 897 SUPERFAMILY CAD & PB1 domains 788 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi88g00075 Sebi-Chr88 1350609 1356269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi88g00075 36 894 NLP Transcription Factor Family AT2G43500 51.591 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sebi88g00075 PB1 5.2e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi88g00075 - - gmx:100804426 1370.14