Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi88g00056 ATGCCGCTTCCGAGCAAATCTATGGAATCAGAGGAATGGGGAAGCCCCTCCAACAACCTATGGGTTGGAAATCTGGCGCCGGAAGTCACCGACGCCGATCTCATGGACCTCTTCGCTCAATACGGTGCGCTTGATAGCGTCACAACCTACTCCTCTCGCAGTTACGCTTTTGTCTTCTTCAACCGCATCGAAGATGCTAAGGCCGCTAAAACCGCCTTGCAAGGCACTCCTCTGCGCGGTTTTTCTATCAAAATTGAGTTTGCCAGACCGGCTAAGCCATGTAAACAACTATGGGTCGGTGGTATTAGCCAAGCTGTTACCAAGGAAGAATTGGAAGGTGAGTTTCGTAAATTCGGTAAGATTGACGATTTTAAGTTCTTTAGAGATCGCAATACCGCTTGTGTTGAGTTTCTCAGTTTGGATGATGCTACTCGGGCCATGAAAATCATGAATGGAAAGCGTTTAGGTGGCGACCAGATTCGTGTAGACTTCCTTCGATCACAATCTACAAAAAGAGATCTTTTGGTTGAATTTGGACAGTTTCAGGCAAGACCACAGCATTCACAACCTTCGATGGGGAGGGATGGTCAACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCTTTTCAGATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTACAAGACATTATGCATTTGTTGAATTTAGAAGTGTTGATGAAGCTCGGCGTGCCAAAGAGGGCCTTCAAGGACGGCTTTTTAATGATTCTCGAATAACAATTATGTACTCAAGCAGTGAGCTGGCACCTGGAAAAGATTACCCTGGTTTTTATCCTGGAAGTAAAGGGCCAATATCTGATGGGTTACTTAATGAGCATCCATTTCGACCACTACACATGGATGCGTTTGGTCATAGTCGTCCTATGGTTCCAAATAATTTTCCTGGACAGTTGCCACCTGGTGGTATTGTTGGACCTAATGCACCAACATTGCGACCTTTTGGTCAAGGTCATGAACCTCTTATTACTGGTCCTGAGTTTAATGAGATGGGCACACTCCACAAATTTCAGGATGGTAACTCTATAAGTCAGGTAGGTCCAAACTGGAAAAAGCCATCTCCTCCTGCACCAGGATTGCTTCCTTCTCCTGTGCCTGGTATTAGGCCTCCCACAAGATCCACCTCCGGTGCATGGGATGTACTTAACAAGAACCCATTTCAGAGAGAACCTAAACGTTCGAGGACAGATGGAGCTTTGCTCATTGGTGATGCTCCATTTCCTTCAAGGAATATAGATGATCGTGGATTAGGAATGGAACAAACATATGGAGTTGATCCAGTTATTGATGGAGGTGGTTCTGGTCCAAAGAGTCATCTTGGTTCAATGGGTACTAGGATCACGGCTACAGTACCTGGTTCAGTCGAACCTGATATTGATCATATTTGGCGTGGAATTATTGCAAAAGGAGGAACACCTGTTTGTCATGCTAGATGTGTACCTATCGGGAAAGGGATAGGGACTCAGCTTCCTGATGTCATCGATTGCGCAGCTAGGACAGGATTGGATATGCTCACAAAACACTATGCTGATGCAATTGGTTTTGACGTTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACAGAATTCCTTCGCTACCTCAAAGTAAAAAACCGTGCCGGGGTTGCCAAGCTTGTTGATAACACCACTTTATTTTTGGTACCTCCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGTTTATATGGTGTGGTTCTTAAATTTCCACCAGTTCCAAGTAGCACACCAATGCAACAATCAATGTGTTTGCCTTCGTCGTCAACTCAGTATATGCAGCATATTCCTCCTATGCAAATCGAGTATGGTTCAATCTCTGTAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTGTTGCATGAAGATTCTAAGCTTCCTCCAAAACCATTTCATCCAGTTACAAGTGGGCCTCCTTCAGTTCATTCTGTTCCTCCTGATTATGCTCCTACTAATACTGCTTCTGCATCCCAAGCTGGAGTTACATTAACACCTGAGCTCATTGCAACTTTAACTTCTTTACTCCCGGCAACTACACAATCATCTGCCACTGTTGGTGCTAAGACAGGAGTTGACCCATCAACTATGAAGCCACCATTTCCTCCTATTGCACCTAAGGATGGAAATCAATCTCATTTGTGGAAACAAGGTCATCAAACTGCAGATCCACCCAGTCATCATTCTCAACAGTTTGGGAGTACGTATAACATTCACAGTGCTCAATATCAGGTTTTTCCACCAGCATCTACTCCCAACCACCCTGCTCAATCGGTATCTGGCTCCGACAGTTCCCATTTCCAAGATACTGCTGCCACCCTGCAGCACCTAGGTACTGTTTCATCTCATCCCATGTCTAATTTCATCATACCTTCTCAAAGTGAACAGGTAGTTGTATCTTCTCAAGTCAGTCAGCAGCATCATGTTGAACTATCCCCCAGCACCCAGAAAGGCTATGTTCAGGGAACAGATGCCTCTGTTTTATATAGTTCCAAGTCCTTCCAGCAACCTAACAATTTTATTGCCTCATCTAATCAAGTTCCCAATGCTAATGCTTCACAACAACAAACTTTGACGCCCTATACAGCGGACAAAGTTAATTCAGAGGTTCCAAATCAGCAACTTCATCCTGCTGTTGTTGGAGTTGGTCAGGACATGTCTGAATTGGAAGCTGATAAGAACCAGAGATACCAGTCAACACTACAGTTTGCTGCCAACCTTCTCTTCCAGATACAGCAAAAGCAAACACAAGGAGGGCAGGGGCCTGGAAATCAACAATAA 2901 0.4412 MPLPSKSMESEEWGSPSNNLWVGNLAPEVTDADLMDLFAQYGALDSVTTYSSRSYAFVFFNRIEDAKAAKTALQGTPLRGFSIKIEFARPAKPCKQLWVGGISQAVTKEELEGEFRKFGKIDDFKFFRDRNTACVEFLSLDDATRAMKIMNGKRLGGDQIRVDFLRSQSTKRDLLVEFGQFQARPQHSQPSMGRDGQPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPTRHYAFVEFRSVDEARRAKEGLQGRLFNDSRITIMYSSSELAPGKDYPGFYPGSKGPISDGLLNEHPFRPLHMDAFGHSRPMVPNNFPGQLPPGGIVGPNAPTLRPFGQGHEPLITGPEFNEMGTLHKFQDGNSISQVGPNWKKPSPPAPGLLPSPVPGIRPPTRSTSGAWDVLNKNPFQREPKRSRTDGALLIGDAPFPSRNIDDRGLGMEQTYGVDPVIDGGGSGPKSHLGSMGTRITATVPGSVEPDIDHIWRGIIAKGGTPVCHARCVPIGKGIGTQLPDVIDCAARTGLDMLTKHYADAIGFDVVFFLPDSEEDFASYTEFLRYLKVKNRAGVAKLVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPSSTPMQQSMCLPSSSTQYMQHIPPMQIEYGSISVKEEQVLPMDYNRLLHEDSKLPPKPFHPVTSGPPSVHSVPPDYAPTNTASASQAGVTLTPELIATLTSLLPATTQSSATVGAKTGVDPSTMKPPFPPIAPKDGNQSHLWKQGHQTADPPSHHSQQFGSTYNIHSAQYQVFPPASTPNHPAQSVSGSDSSHFQDTAATLQHLGTVSSHPMSNFIIPSQSEQVVVSSQVSQQHHVELSPSTQKGYVQGTDASVLYSSKSFQQPNNFIASSNQVPNANASQQQTLTPYTADKVNSEVPNQQLHPAVVGVGQDMSELEADKNQRYQSTLQFAANLLFQIQQKQTQGGQGPGNQQ 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi88g00056 966 FunFam flowering time control protein FPA 194 286 - -
Sebi88g00056 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Sebi88g00056 966 CDD RRM_SF 97 163 - -
Sebi88g00056 966 CDD SPOC_FPA-like 488 608 - -
Sebi88g00056 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Sebi88g00056 966 PANTHER RNA RECOGNITION MOTIF-CONTAINING 6 88 - -
Sebi88g00056 966 Pfam SPOC domain 483 600 IPR012921 -
Sebi88g00056 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Sebi88g00056 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 161 IPR000504 GO:0003723
Sebi88g00056 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Sebi88g00056 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Sebi88g00056 966 CDD RRM_SF 20 86 - -
Sebi88g00056 966 MobiDBLite consensus disorder prediction 753 773 - -
Sebi88g00056 966 MobiDBLite consensus disorder prediction 724 773 - -
Sebi88g00056 966 SUPERFAMILY RNA-binding domain, RBD 190 273 IPR035979 GO:0003676
Sebi88g00056 966 SUPERFAMILY RNA-binding domain, RBD 16 169 IPR035979 GO:0003676
Sebi88g00056 966 MobiDBLite consensus disorder prediction 664 698 - -
Sebi88g00056 966 Gene3D - 4 92 IPR012677 -
Sebi88g00056 966 Gene3D - 93 173 IPR012677 -
Sebi88g00056 966 Gene3D - 187 277 IPR012677 -
Sebi88g00056 966 MobiDBLite consensus disorder prediction 672 686 - -
Sebi88g00056 966 CDD RRM_SF 202 269 - -
Sebi88g00056 966 SMART rrm1_1 96 163 IPR000504 GO:0003723
Sebi88g00056 966 SMART rrm1_1 201 269 IPR000504 GO:0003723
Sebi88g00056 966 SMART rrm1_1 19 86 IPR000504 GO:0003723
Sebi88g00056 966 MobiDBLite consensus disorder prediction 785 807 - -
Sebi88g00056 966 FunFam Flowering time control protein FPA isoform A 93 193 - -
Sebi88g00056 966 FunFam Flowering time control protein FPA 10 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi88g00056 Sebi-Chr88 957299 963390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi88g00056 19 262 Eukaryotic Initiation Factors Gene Family AT2G36660 25.940 2.72e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi88g00056 - - gmx:100806555 1407.89