Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi88g00038 ATGGGGTTCTCAGTAAGACAATTCTCAATCTATGCTTTGAATATGAACCCATGGGCAGTTCCAGTTGGGCTTGTGGTTTTCTCATACTTATGGTTGCCAATTTCAAGTCTTGGTTCCATGTCTTCAATTGCTGTGTCTTATGGCGATAAAGGTTCGGTTTTTTGTGGCCTAAAATCAGATGGATCTCACACTGTGACCTGTTATGGATTGAACTCAGCCATAATTTATGGAACACCAGCTCATTTCCCATTCCTTGGTCTAACAGCTGGTGATGGGTTTGTCTGTGGGCTTCTAATGAGTTCTAGGCAACCATATTGTTGGGGTAGCAGTAGCCATATAGAAATGGGTGTGCCACAACCTATGGTTAAAGGAGCTCAGTACCTAGAAATCAGTGCTGGGGATTATCATGTTTGTGGGTTGAGGAAACCCTTAACTGGAAAACACAGGAACACTTCTTTTGTTGATTGTTGGGGCTACAACATGACCAACAACTATGTGTTTGATGGGCAAATTCAATCAATCTCAGCAGGTTCTGAATTCAATTGTGGCTTATTTTCCCAGAATAGGACTGTGTTTTGCTGGGGTGATGAGACTAGTAGCCAAGTTATTAACTTGATTCCTCAAGGCATGAGATTCCAGAAGCTCTCTGCTGGAGGGTATCATGTATGTGGGATCCTAGAAGGGGTGAATTCTAGAGCTGTTTGTTGGGGAAGGAGCTTGGATATGGAGGAGGAAATTTCATTGACACATTCAGGAAAAGGACAAGGTAACGTTGATTTGGCTCCAATTGATCCCATGCTTTCTGTAGTGGGAGGAAAGTTCCATGCTTGTGGTATTAAGAGCTATGATCATGGCATAATTTGCTGGGGCTATAGTCTGAAAGCAAGCACCCCAGTTCCTAGTGGGATTAAGGTCTTTGAGATTGCTGCTGGGAATTATTTTACCTGTGGAATACTTGCTTCAAAATCTCTTGAGCCTGTTTGTTGGGGTGTTGGCTTCCCTTCCTCTCTACCATTGGCTGTCTCACCAAGAATGTGCAGGCCAACATCATGTCCTCCAGGTTACTATGAAATTGACCAGGATCAGTACAAGGGTCTTTGCAAGTCCCCAAATTCTCACGTTTGCATGCCATGCAGTGGTGTTTGTCCTGCTGAAATGTACCAGAAAAGTGGTTGCAGTTTGAAATCTGACAGGTTATGTGAGTATAATTGTTCTGTTTGTTCCTCACCTGAATGCTTCTCCAATTGCTCCTCTTCTTCCTATTCCAATGGGAAGAAAAAAGAAAAATTTTGGTCTCTGCAATGGCCAGTGGTTATTGCAGAGATAGCTTTTGCAGTTTTCTTAGTTAGTATTGTATCTCTAACTGCAGTTATGTATGTTCGCTACAAGCTAAGAGATTGTGAGTGTTCAGTGAGAGGGTCAAAGGTGAAGAAACTTCATGGGAGTTCTTCACTCCAAAAGGAGAATGGTAAGATCCGCCCAGATATGGAGGAGTTCAAGATTAGAAGGGCTCAGATGTTCACTTATGAGGAACTTGAAAGGGCAACTGATGGATTCAAAGAAGAATCCATAGTGGGGAGGGGAAGCTTTTCATGTGTGTTCAAAGGGGTTCTCAAAGATGGGACTGATGTTGCTGTTAAAAGGGCCATAATGTCTCCCAACATGCAGAAAAACTCCAAAGAGTTTCACACAGAACTTGACTTACTCTCTAGGCTGAACCATGCCCATTTGCTCAACCTACTAGGCTATTGTGAAGAAGGTGGAGAAAGACTTCTTGTTTATGAGTACATGGCTCATGGTTCTTTGCATCAACACCTCCATGGCAAAAGCAAAGCTTTGAAAGAGCAATTGGATTGGGTCAGAAGGGTAACAATTGCAGTTCAAGCAGCTCGTGGGATAGAATATTTGCATGGCTATGCTTGCCCACCAGTGATCCATAGAGATATTAAGTCTTCAAACATCCTCATTGATGAAGAACACAATGCTAGAGTGGCTGATTTTGGTTTGTCATTACTAGGTCCTGCAGATAGTAGCTCCCCACTAGCTGAGCTACCAGCTGGAACTCTTGGTTATCTTGATCCTGAATACTATAGGCTTCATTATCTAACCACAAAATCTGATGTCTACAGCTTTGGTGTTCTACTTTTGGAAATTTTAAGTGGTAGAAAAGCCATTGACATGCAATATGAAGAAGGGAACATTGTTCAATGGGCAGTGCCTTTAATCAAGTCAGGAAATATAGCTGCAATTTTGGACCCAGTTCTGAAACCCCCTCCTGATCTTGAAGCCTTGAAAAGGATAGCAAATGTGGCTTGTAAAAGTGTGAGAATGAGAGGAAAGGATAGGCCTTCAATGGACAAAGTAACAACAGCTTTGGAGAGAGCTCTTGCACAGTTAATGGGTAGTCCTTGCATTGAGCAGCCAATTTTGCCAACTGAGGTGGTTTTAGGAAGTAACAGATTGCACAAGAAATCATCTCAAAGATCATCAAACAGATCAGCTTCAGAAACTGATGTGGCAGAAACTGAGGATCAGAGGTTTGAGTTTAGAGCACCCTCATGGATAACTTTCCCAAGTGTTACTTCTTCTCAAAGAAGAAAGTCATCAGGGTCAGAGGCTGAAGTTGATGGGAAAAATAATGCTGAAGGGAGGAACTTGGGAAATGTTGGAGGTGGTGGTGATGTTTTGAGAAGCCTTGAGGAAGAGATTGGTCCTGCATCTCCTCAAGAGAGACTGTTCTTGCAACACAACTTCTAA 2757 0.4262 MGFSVRQFSIYALNMNPWAVPVGLVVFSYLWLPISSLGSMSSIAVSYGDKGSVFCGLKSDGSHTVTCYGLNSAIIYGTPAHFPFLGLTAGDGFVCGLLMSSRQPYCWGSSSHIEMGVPQPMVKGAQYLEISAGDYHVCGLRKPLTGKHRNTSFVDCWGYNMTNNYVFDGQIQSISAGSEFNCGLFSQNRTVFCWGDETSSQVINLIPQGMRFQKLSAGGYHVCGILEGVNSRAVCWGRSLDMEEEISLTHSGKGQGNVDLAPIDPMLSVVGGKFHACGIKSYDHGIICWGYSLKASTPVPSGIKVFEIAAGNYFTCGILASKSLEPVCWGVGFPSSLPLAVSPRMCRPTSCPPGYYEIDQDQYKGLCKSPNSHVCMPCSGVCPAEMYQKSGCSLKSDRLCEYNCSVCSSPECFSNCSSSSYSNGKKKEKFWSLQWPVVIAEIAFAVFLVSIVSLTAVMYVRYKLRDCECSVRGSKVKKLHGSSSLQKENGKIRPDMEEFKIRRAQMFTYEELERATDGFKEESIVGRGSFSCVFKGVLKDGTDVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGKSKALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWAVPLIKSGNIAAILDPVLKPPPDLEALKRIANVACKSVRMRGKDRPSMDKVTTALERALAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSASETDVAETEDQRFEFRAPSWITFPSVTSSQRRKSSGSEAEVDGKNNAEGRNLGNVGGGGDVLRSLEEEIGPASPQERLFLQHNF 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi88g00038 918 SMART serkin_6 519 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi88g00038 918 FunFam serine/threonine-protein kinase-like protein CCR1 489 596 - -
Sebi88g00038 918 SUPERFAMILY Protein kinase-like (PK-like) 499 792 IPR011009 -
Sebi88g00038 918 Gene3D Phosphorylase Kinase; domain 1 491 596 - -
Sebi88g00038 918 Gene3D Transferase(Phosphotransferase) domain 1 597 802 - -
Sebi88g00038 918 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Sebi88g00038 918 MobiDBLite consensus disorder prediction 821 844 - -
Sebi88g00038 918 FunFam Receptor protein kinase CRINKLY4 597 799 - -
Sebi88g00038 918 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 25 918 - -
Sebi88g00038 918 MobiDBLite consensus disorder prediction 860 918 - -
Sebi88g00038 918 Gene3D - 83 343 IPR009091 -
Sebi88g00038 918 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 350 400 IPR001368 GO:0005515
Sebi88g00038 918 ProSiteProfiles Protein kinase domain profile. 519 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi88g00038 918 FunFam Serine/threonine-protein kinase-like protein CR4 36 203 - -
Sebi88g00038 918 MobiDBLite consensus disorder prediction 821 836 - -
Sebi88g00038 918 SUPERFAMILY RCC1/BLIP-II 36 291 IPR009091 -
Sebi88g00038 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Sebi88g00038 918 Pfam Protein tyrosine and serine/threonine kinase 522 790 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi88g00038 Sebi-Chr88 546337 549093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi88g00038 10 918 Receptor kinase-like Gene Family AT3G59420 69.071 0.0 1278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Sebi88g00038 PK_Tyr_Ser-Thr 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi88g00038 - - gmx:100807392 1541.55