Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi88g00018 ATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGATAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAAGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGTTGATTTGAAAGAAGTAACACAGAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGAGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCTTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGGACAATTTATCTGTGTCATGTGATAATGGAGTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGGCATCGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGCAAGGGTGAGATGCATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGTGATGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAGAGAAGAATTAG 1419 0.3622 MIELVVLDEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKSNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGIQFSQLSDHASLTLEEEFLERGVYKSIVDLKEVTQNSVFVTIGTVKDIESEYNWCYRACKKCSLGLKLDESMFYCKKCVTHYSTFVTRYSIQLRVVDETDSASFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDSFKDKKFLFKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVALIQDNSELLSQFTESSDLLKDNLSVSCDNGVDTPSPLLPTGKTASNMDSSVIKVLDVDLAEYCGNASFDTPSKCKGEMHSEQTIVRVAVHGDEQSAKKLRKVIKEEKN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi88g00018 472 SUPERFAMILY Nucleic acid-binding proteins 2 68 IPR012340 -
Sebi88g00018 472 CDD RPA1_DBD_B_like 97 172 - -
Sebi88g00018 472 Gene3D - 1 71 IPR012340 -
Sebi88g00018 472 SUPERFAMILY Nucleic acid-binding proteins 77 201 IPR012340 -
Sebi88g00018 472 Pfam Domain of unknown function DUF223 3 91 IPR003871 -
Sebi88g00018 472 SUPERFAMILY Nucleic acid-binding proteins 202 334 IPR012340 -
Sebi88g00018 472 CDD RPA1_DBD_A_like 2 67 - -
Sebi88g00018 472 CDD RPA1_DBD_C 210 329 IPR047192 -
Sebi88g00018 472 Gene3D - 189 354 IPR012340 -
Sebi88g00018 472 Gene3D - 85 188 IPR012340 -
Sebi88g00018 472 Pfam Replication factor-A C terminal domain 211 329 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi88g00018 Sebi-Chr88 324801 327246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi88g00018 6 333 Core DNA Replication Machinery Family AT5G08020 21.636 8.36e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi88g00018 - - adu:107477146 372.474