Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi889g00018 ATGGCACAAGATGAAGGACACAAGCCCACAGTCGAGGAGAAAGTTCCCTTCTATAAGCTTTTCACTTTTGCAGACCGCCTTGACGTCACTTTGATGATCATTGGTGTCATTTGTGCCATGGCTAATGGGTTAACACAGCCTCTCATGACCCTCATTTTTGGGAAGCTTATCAATACCTTTGGCACCACCGATCCTTCCCACATTGTCAACCAAGTTTCTAAGGTTGCATTATTATTTATTTATTTGGCTATTGGATCTGGTATAGCATCATTTCTACAGGTATCATGTTGGATGGTAACAGGAGAAAGACAAGCAGCACGAATTCGTAACTTGTACTTGAAAACTATATTAAAGCAAGACATTGCCTACTTTGACACTGAAACAACAACTGGAGAGGTAATTGGGAGAATGTCTGGTGATACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGTGTCAACCTTTTTTGGTGGATTTGTGATTGCCTTTACAAAAGGGTGGCAACTGTGCATAGTTTTGCTTGCATGTATTCCTTGTATTGTCATTGTTGGTGGGATTATGTCCATGATGATGGCAAAAATGTCAAGCCGTGGCCAAGCTGCTTATGCAGAAGCTGGAAATGTTGTTCAACAAACGGTTGGAGCCATTAGAACAGTTGCCTCTTTTACTGGTGAGGAAAAAGCAATTGAGAAGTACCATAACAAGTTAAAAATTGCTTATAAAACTACAGTTCAACAAGGGTTGGCCTCAGGGTTAGGAATGGGAGTACTTTTGCTAATTGTCTTTAGCACCTATGGACTTGCTATGTGGTATGGCTCCAAACTGATCATTGAGAAAGGATACAATGGTGGAGATGTTTTTAATATAATCATATCAATTAATACTGGTGGAATGTCACTTGGTCAAACGACCCCATGCCTAAATGCATTTGCAGCAGGCCAAGTAGCAGCATATAAGATGTTTGAGACAATTAAACGAAAACCAAAAATTGATGCTTATGACACTAATGGTGTTATCTTGGAAGACATAAAGGGAGATATAGAACTTAAGGATGTTTACTTCAAATACCCTGCAAGGCCAGATGTGCAAATCTTTGTTGGATTCTCATTCTATATTCCAAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGTAGTGGGAAGTCAACTATAATCAGTTTATTAGAAAGATTCTATGACCCTGATGCTGGAGAAGTACTTATTGATGGTGTTAATTTAAAGAATTTTCAAGTTAGATGGATAAGGGAACAAATTGGGCTTGTTGGTCAAGAACCTGTCCTGTTTACAGCTAGTATCAAGGAGAACATTTCATATGGGAAAGAAGGTGCAACAGATGAGGAGATAACATCAGCAATAACACTTGCCAATGCCAAAAAGTTCATCGATAAGCTGCCTCAGGGCCTTGACACAATGGTAGGAGGGCATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAAAATCCTTCTTCTTGATGAAGCAACTAGTGCTTTGGATGCTGAGTCAGAACGTATTGTTCAAGAAGCATTGGAAAGAGTTATGTCAAAAAGGACTACTGTTGTTGTTGCACATCGTTTGACAACCATTAGAAATGCTGATACCATAGCAGTGGTTCATCAGGGGAAAATTGTGGAAAAAGGAACTCATAATGAGTTAATCAAGGATCCTGATGGTGCTTATTCTCAACTCATTCGTCTACAAGAAAAATCCATGGAAGCAGAAGGAAGCCATAATTCTGAAGCAAATGAGTCAAAGAAAAGTTTTAATTTAGATAATCAAATGACTAGATCTTCCACCCAAAGAACATCCTTTGCAAAATCAATAAGCCAAGGTTCATCAGGCAGTAGACACTCTTTCTCACATGGCTTTACTCTTCCTTATCAAATTGATGCAAATGAGTCTGGTGAAAGAGCTAATGGAGATGTTGAAAATAGTGAACTTGATAATGTGAAACATCAAAAGGGTTCTGTTAAACGTTTAGCCAAGTTAAATAAGGCTGAGGTTCCTGTATTACTACTTGGATCCATTGCTGCAGCAGTACATGGTGTTATTCTCCCTGTATTTGGCCTTCTGCTTTCATCAGCTATTAATACATTCTATGAACCTGCAGAACAGCTTAGAAAAGATTCTAAGTTTTGGTCACTTGTAGATGTTGGTTTGGGTATTGTTACTCTGGTGGCTATACCAATGCAGAACTACTTATTTGGGATTGCTGGTGGAAAACTTATAGAAAGAATTCGTTTATTAACATTTAAAAAGGTTGTGCACCAAGAAATTAGTTGGTTTGATCAACCTTCAAATTCAAGTGGTGCAGTTAGTGCAAGGCTAGCTACTGATGCTTCAACAGTGAGAACTCTTGTTGGTGACACCTTGGCCCTTATTGTGCAAAACATAGCAACAGTCACAGCAGGTCTAGTTATAGCATTCACAGCTAATTGGATCCTGGCTTTTGTAGTTCTGGCTGTGTCACCCTTGTTGCTCATACAAGGATACCTTCAAACCAAGTTTCTAAAAGGATTCAGTGCAGATGCAAAGGCGAAGTATGAAGAGGCTAGTCAAGTGGCAAATGATGCTGTTGGTAGCATCAGAACTGTTGCATCATTTTGTGCTGAACCAAAGGTGATGGATATGTATCAGAAGAAATGTTTAGAACCAAAAAAACAAGGTGTTCGGTTAGGGCTTGTTAGTGGTGCAGGATTAGGTTTCTCCTTTTTTGCTTTATATTGCACAAATGCCTTTTGTTTCTACATAGGAGCTGTTCTTGTGAAACACGGGAAGGCAACTTTTGGAGAGGTTTTCAAGGTTTTCTTTTCTTTAACGGTTACAGCTGTTGGTGTTTCCCAAACTAGTGCCTTAGCACCAGATACTAACAAGGCCAAAGATTCTGCAGCTTCAATATTTCAAATTCTTGACAGCAAACCAATGATTGACTCCAGCAGTAATGAGGGCATAACACTAAAAACAGTAAAAGGTGACATTGAACTTCAACAAACTGTTGCCTTGGTTGGAGAAAGTGGTAGTGGAAAATCAACAGTCATCAGCCTCTTAGAGAGATTTTATAACCCTGATTCTGGTCGTATACTACTAGATGGGGAAGATATAAAAAAGTTAAGACTAAGCTGGCTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCATGCAAACATAGCTTATGGCAAAGAGGGAGGTGCTACAGAGGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAGGTTCATAAGTTCTCTTCCAAATGGTTATGACACCTCTGTTGGAGAAAGAGGCACACAATTGTCAGGGGGACAAAAGCAACGTATAGCCATTGCAAGAGCCATATTGAAAGATCCCAAAATCCTTTTGCTTGATGAGGCAACAAGTGCACTTGATGCTGAGTCAGAGCGTGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAACAGAACTACTGTTGTGGTAGCTCATCGTCTTGCAACAATTAAAGGTGCTGACATTATAGCTGTAGTGAAAAATGGGGTGATTGTTGAGAAAGGAGGACATGATGCTTTGATGAAGATTGATGGTGGAGTTTATGCTTCATTGGTGGCTCTCCATATCAGTGCATCATAG 3711 0.3994 MAQDEGHKPTVEEKVPFYKLFTFADRLDVTLMIIGVICAMANGLTQPLMTLIFGKLINTFGTTDPSHIVNQVSKVALLFIYLAIGSGIASFLQVSCWMVTGERQAARIRNLYLKTILKQDIAYFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLVSTFFGGFVIAFTKGWQLCIVLLACIPCIVIVGGIMSMMMAKMSSRGQAAYAEAGNVVQQTVGAIRTVASFTGEEKAIEKYHNKLKIAYKTTVQQGLASGLGMGVLLLIVFSTYGLAMWYGSKLIIEKGYNGGDVFNIIISINTGGMSLGQTTPCLNAFAAGQVAAYKMFETIKRKPKIDAYDTNGVILEDIKGDIELKDVYFKYPARPDVQIFVGFSFYIPSGTTAALVGQSGSGKSTIISLLERFYDPDAGEVLIDGVNLKNFQVRWIREQIGLVGQEPVLFTASIKENISYGKEGATDEEITSAITLANAKKFIDKLPQGLDTMVGGHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALERVMSKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGTHNELIKDPDGAYSQLIRLQEKSMEAEGSHNSEANESKKSFNLDNQMTRSSTQRTSFAKSISQGSSGSRHSFSHGFTLPYQIDANESGERANGDVENSELDNVKHQKGSVKRLAKLNKAEVPVLLLGSIAAAVHGVILPVFGLLLSSAINTFYEPAEQLRKDSKFWSLVDVGLGIVTLVAIPMQNYLFGIAGGKLIERIRLLTFKKVVHQEISWFDQPSNSSGAVSARLATDASTVRTLVGDTLALIVQNIATVTAGLVIAFTANWILAFVVLAVSPLLLIQGYLQTKFLKGFSADAKAKYEEASQVANDAVGSIRTVASFCAEPKVMDMYQKKCLEPKKQGVRLGLVSGAGLGFSFFALYCTNAFCFYIGAVLVKHGKATFGEVFKVFFSLTVTAVGVSQTSALAPDTNKAKDSAASIFQILDSKPMIDSSSNEGITLKTVKGDIELQQTVALVGESGSGKSTVISLLERFYNPDSGRILLDGEDIKKLRLSWLRQQMGLVGQEPILFNESIHANIAYGKEGGATEDEIIAAAQAANAHRFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQEALDRVSVNRTTVVVAHRLATIKGADIIAVVKNGVIVEKGGHDALMKIDGGVYASLVALHISAS 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi889g00018 1236 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524|GO:0016887
Sebi889g00018 1236 FunFam ABC transporter B family member 9 19 349 - -
Sebi889g00018 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1005 1230 IPR027417 -
Sebi889g00018 1236 Pfam ABC transporter 1011 1161 IPR003439 GO:0005524
Sebi889g00018 1236 CDD ABC_6TM_Pgp_ABCB1_D2_like 686 1001 - -
Sebi889g00018 1236 FunFam ABC transporter B family member 1 1001 1233 - -
Sebi889g00018 1236 SMART AAA_5 381 567 IPR003593 GO:0016887
Sebi889g00018 1236 SMART AAA_5 1020 1213 IPR003593 GO:0016887
Sebi889g00018 1236 PANTHER ABC TRANSPORTER B FAMILY 3 601 IPR039421 -
Sebi889g00018 1236 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 354 590 IPR003439 GO:0005524
Sebi889g00018 1236 MobiDBLite consensus disorder prediction 594 645 - -
Sebi889g00018 1236 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00018 1236 FunFam ABC transporter B family member 1 676 984 - -
Sebi889g00018 1236 Pfam ABC transporter transmembrane region 697 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00018 1236 Pfam ABC transporter transmembrane region 32 303 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00018 1236 Gene3D ABC transporter type 1, transmembrane domain 19 615 IPR036640 GO:0005524|GO:0016020
Sebi889g00018 1236 ProSitePatterns ABC transporters family signature. 493 507 IPR017871 GO:0005524|GO:0016887
Sebi889g00018 1236 MobiDBLite consensus disorder prediction 607 645 - -
Sebi889g00018 1236 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 995 1230 IPR003439 GO:0005524
Sebi889g00018 1236 CDD ABC_MTABC3_MDL1_MDL2 354 592 - -
Sebi889g00018 1236 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 697 983 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00018 1236 FunFam ABC transporter B family member 1 344 593 - -
Sebi889g00018 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 592 IPR027417 -
Sebi889g00018 1236 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 327 - -
Sebi889g00018 1236 Gene3D ABC transporter type 1, transmembrane domain 661 1006 IPR036640 GO:0005524|GO:0016020
Sebi889g00018 1236 SUPERFAMILY ABC transporter transmembrane region 679 999 IPR036640 GO:0005524|GO:0016020
Sebi889g00018 1236 SUPERFAMILY ABC transporter transmembrane region 19 338 IPR036640 GO:0005524|GO:0016020
Sebi889g00018 1236 Gene3D - 1022 1231 IPR027417 -
Sebi889g00018 1236 Gene3D - 344 593 IPR027417 -
Sebi889g00018 1236 Pfam ABC transporter 375 521 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi889g00018 Sebi-Chr889 246145 251365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi889g00018 15 1232 Calmodulin-binding Proteins AT2G36910 43.645 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi889g00018 K05658 - gmx:100792531 2011.88