Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi889g00017 ATGGCACACAACACTAGTGAGGTGCCGCCTCCACAACCTCAAGATCATGAAAAAGTTACCAACAACCAGAAAGTTCCATTCTACAAGCTTTTCACTTTTGCTGATCGCCTTGACGTGACGTTGATGATCATTGGCACCATTTGTGCCATGGCAAATGGCTTATCGCAACCTCTCATGACCCTCATTCTTGGGAAGCTCATCAACGCCTTTGGCTCCAACGTTCCATCCCAAGTTGTTCATCAAGTTTCTAAGGTTGCACTATTATTTGTTTATTTGGGAGTTGGGTCAGGAATAGCATCATTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCACACGAATCCGTGGCTTGTACTTGAAAACTATATTAAAACAAGACATTGCTTTCTTTGACACTGAAACAACAACTGGAGAGGTTGGGAAGTTTATTCAACTTGCTTCAACCTTTTTTGGTGGCTTTGTGATTGCCTTTGTAAAAGGATGGCAACTCGCTCTAGTTTTGCTTTCATGTATACCATTGGTTATCATTGCTGGTGGATTCATGTCTGTGTTGATGTCTAGAATGTCAAGTCGTGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGAACAAATAGTGGGAGCCATTAGAACAGTTGCATCTTTTACTGGCGAGAAAAAAGCAATAGAAAAGTATAATATAAAGTTAAAAGTTGCTTACACTACAATGGTTCAACAAGGGATGGTCTCAGGGCTAGGAATGGGAGTGCTTATGTTGATTATCTTTTGCACCTATGGACTTGCCATGTGGTATGGTTCCAAACTGGTCATTGAAAAAGGATACATTGGTGGAACTGTCATAACTGTAATTGTAGCTCTTATGACTGGAGGAATGTCACTGGGTCAGGCATCCCCATGTGTAAATGCATTTGCTACAGGTCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCTAAAATTGATGCTTATGACACCAGTGGTGTTATCTTGGAAGACATAAAGGGAGATATTGAGCTTAAAGATGTTCACTTCACATACCCTGCAAGACCAGATGTGCAGATATTCACTGGATTCTCATTATTTGTTCCAAATGGCACAACTACTGCTTTAGTGGGTCAAAGTGGAAGTGGGAAGTCTACAGTAATCAGTTTATTAGAAAGATTCTATGATCCTGATGCTGGAGAAGTACTTATAGATGGAGTGAATTTGAAGAGTTTGCAAGTTAGATGGATAAGAGAACAGATTGGGTTGGTTAGTCAAGAACCTATCCTATTTACAACTAGTATCAAAGAGAACATAGCTTATGGGAAAGAAGGTGCAACTGATGAGGAGATAGCAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGCTGCCTCAGGGCCTTAACACAATGGCAGGGCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATATTGAAGAACCCAAAAATCCTCCTTCTTGATGAAGCAACCAGTGCTTTGGATGCTGAGTCAGAACGTATTGTTCAAGAAGCATTGGAAAGAGTTATGTCAAAAAGGACTACTGTAGTTGTTGCACATTGTTTGACAACCATTAGAAATGCTAATACCATAGCAGTGGTTCATCAGGGGAAGATAGTGGAAAAAGGAACTCATGATGAGTTAATCAAGGATGTTGATGATAGTCATATGATTAGATCAATAAGCAGAGGTTCATCAGGGAGTCGACACTCTCAATCCCTTAGCTTTGCTCTACCTTATCAAAGTGGTGGACAAACAGAAGAAGTGGGTGTTGAACAAAGTCATGTTGATAATAAGAATCCCAAAAGGGTTTCTATAAGACGTTTGGCATACCTAAATAAGCCTGAGGCTCTTGTCTTACTACTTGGATCCATTGCTGCAGCAATAAATGGTGTTGTGTTCCCTATATTTGGCCTCTTGTTTTCATCAGCCATTACTATGTTCTTTAAACCTCCAGAACAACAGCAGAAAGATGCTAGGTTCTGGACACTTCTTTATGTGGGCTTAGGTTTAGTTACTCTAGTGGTTTTCCCACTCCAAAATTACTTCTTTGGTATTGCTGGTGGAAAACTAATAGAGAGAATTCGTTCCTTAACATTTGAGAAGGTTGTGCATCAAGAAATCAGTTGGTTTGATGACCCTGCAAATTCTAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTTGTTGGTGACACCTTGTCCCTCATGGTGCAAAACATATCAACAATCACAACAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTCGCTTTAATAATTCTGGCTGTGTCACCCATGGTCATAATGCAAGGATGCATTCAAATGAGGTTTCTTAAAGGATTCAGTGCTGATGCCAAGGTTAAGTATGAAGAGGCAAGTCAAGTGGCAACTGATGCTGTTGGTAGCATTAGAACTGTTGCATCATTTTGTGCAGAATCAAAGGTGATGGATATGTACAGGAAGAAATGTTCAAGGCCAGAAAAACAAGGCGTTCGGTTGGGGCTTGTTAGTGGTGCAGGACTTGGTTTCTCTTTTATGGCTCTATATTGCACAAATGCTTTTTGTTTCTACATAGGATCTGTTCTTGTGCGACATGGCCTTGCAACTTTTTCAGAGGTTTTCAGGGTGTTCTTTTGCATAACAATTACAGCAATTGGTGTTTCCCAGACAAATGCCTTAGCACCGGACACTAACAAGGCCAGAGATTCCGCAACTTCAATATTTGAAATTCTTGACAGCAAACCTATCATTGACTCAAGCAGCAATGAAGGTAGAACACTAGAAACAGTTACTGGCAATATTGAACTTCATCATGTCAACTTTAATTACCCAACAAGGCCTCATATTCAAATTCTCAGAGATTTGAGCTTAAAAATCCCATCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGTTGTGGAAAATCAACAATCATCAGTCTTTTGGAGAGGTTTTATAATCCTAGCTCTGGGCATATACTACTAGATGGTGTGGATATTAGAGAGTTCAGATTAAGTTGGTTGAGGCAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGCAAACATAGCTTATGGCAAAGAGGGAGGTGCTACAGAGGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAGGTTCATAAGTTCTCTTCCAAATGGTTATGACACCTCTGTTGGAGAAAGAGGTACACAACTATCAGGAGGGCAAAAGCAACGTATTGCCATTGCAAGAGCCATGCTAAAAGACCCTAAAGTCCTTTTACTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCAGAGCGTGTAGTTCAAGAGGCTTTAGACAGAGTCAGTGTGGATAGAACTACTGTTGTGGTAGCTCACCGTCTTACAACAATCAGAGGGGCTGATATTATAGCAGTAATTAAAAATGGGGTAGTTGCTGAAAAGGGGAAGCATGATGTCTTGATCAAGATTACTGATGGGGCTTATGCTTCATTGGTTGCTTTATATTCTGGTGCAGCATAA 3618 0.4074 MAHNTSEVPPPQPQDHEKVTNNQKVPFYKLFTFADRLDVTLMIIGTICAMANGLSQPLMTLILGKLINAFGSNVPSQVVHQVSKVALLFVYLGVGSGIASFLQVSCWMVTGERQATRIRGLYLKTILKQDIAFFDTETTTGEVGKFIQLASTFFGGFVIAFVKGWQLALVLLSCIPLVIIAGGFMSVLMSRMSSRGQAAYAEAGNVVEQIVGAIRTVASFTGEKKAIEKYNIKLKVAYTTMVQQGMVSGLGMGVLMLIIFCTYGLAMWYGSKLVIEKGYIGGTVITVIVALMTGGMSLGQASPCVNAFATGQAAAYKMFETIKRKPKIDAYDTSGVILEDIKGDIELKDVHFTYPARPDVQIFTGFSLFVPNGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKSLQVRWIREQIGLVSQEPILFTTSIKENIAYGKEGATDEEIATAITLANAKKFIDKLPQGLNTMAGQNGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALERVMSKRTTVVVAHCLTTIRNANTIAVVHQGKIVEKGTHDELIKDVDDSHMIRSISRGSSGSRHSQSLSFALPYQSGGQTEEVGVEQSHVDNKNPKRVSIRRLAYLNKPEALVLLLGSIAAAINGVVFPIFGLLFSSAITMFFKPPEQQQKDARFWTLLYVGLGLVTLVVFPLQNYFFGIAGGKLIERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLSLMVQNISTITTGLVIAFTANWILALIILAVSPMVIMQGCIQMRFLKGFSADAKVKYEEASQVATDAVGSIRTVASFCAESKVMDMYRKKCSRPEKQGVRLGLVSGAGLGFSFMALYCTNAFCFYIGSVLVRHGLATFSEVFRVFFCITITAIGVSQTNALAPDTNKARDSATSIFEILDSKPIIDSSSNEGRTLETVTGNIELHHVNFNYPTRPHIQILRDLSLKIPSGKTVALVGESGCGKSTIISLLERFYNPSSGHILLDGVDIREFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDEIIAAAQAANAHRFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKVLLLDEATSALDAESERVVQEALDRVSVDRTTVVVAHRLTTIRGADIIAVIKNGVVAEKGKHDVLIKITDGAYASLVALYSGAA 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi889g00017 1205 SUPERFAMILY ABC transporter transmembrane region 29 329 IPR036640 GO:0005524|GO:0016020
Sebi889g00017 1205 CDD ABC_6TM_Pgp_ABCB1_D2_like 630 945 - -
Sebi889g00017 1205 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00017 1205 Gene3D ABC transporter type 1, transmembrane domain 29 932 IPR036640 GO:0005524|GO:0016020
Sebi889g00017 1205 CDD ABC_MTABC3_MDL1_MDL2 345 570 - -
Sebi889g00017 1205 Gene3D - 335 619 IPR027417 -
Sebi889g00017 1205 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 962 1199 IPR003439 GO:0005524
Sebi889g00017 1205 ProSitePatterns ABC transporters family signature. 1102 1116 IPR017871 GO:0005524|GO:0016887
Sebi889g00017 1205 Pfam ABC transporter transmembrane region 641 912 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00017 1205 Pfam ABC transporter transmembrane region 42 142 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00017 1205 Pfam ABC transporter transmembrane region 143 294 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00017 1205 Gene3D - 952 1203 IPR027417 -
Sebi889g00017 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 571 IPR027417 -
Sebi889g00017 1205 SUPERFAMILY ABC transporter transmembrane region 621 943 IPR036640 GO:0005524|GO:0016020
Sebi889g00017 1205 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 318 - -
Sebi889g00017 1205 Pfam ABC transporter 980 1130 IPR003439 GO:0005524
Sebi889g00017 1205 ProSitePatterns ABC transporters family signature. 484 498 IPR017871 GO:0005524|GO:0016887
Sebi889g00017 1205 SMART AAA_5 989 1176 IPR003593 GO:0016887
Sebi889g00017 1205 SMART AAA_5 372 564 IPR003593 GO:0016887
Sebi889g00017 1205 PANTHER ABC TRANSPORTER B FAMILY 14 571 IPR039421 -
Sebi889g00017 1205 CDD ABC_MTABC3_MDL1_MDL2 962 1198 - -
Sebi889g00017 1205 FunFam ABC transporter B family member 1 335 581 - -
Sebi889g00017 1205 FunFam ABC transporter B family member 1 952 1202 - -
Sebi889g00017 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 952 1199 IPR027417 -
Sebi889g00017 1205 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 345 581 IPR003439 GO:0005524
Sebi889g00017 1205 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 641 927 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00017 1205 Pfam ABC transporter 366 512 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi889g00017 Sebi-Chr889 237147 242097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi889g00017 4 1200 Calmodulin-binding Proteins AT2G36910 44.171 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi889g00017 K05658 - gmx:100801771 1873.6