Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi889g00006 ATGGGGGATCTGGAGAGAATGGGCAGAGAACTCAAATGTCCCATCTGTTTGAGTTTGTTCAATTCTGCAGTCTCACTCACCTGCAATCATCTTTTCTGCAACGCATGTATATTCAAGTCCATGAAATCAGCCTCTTCTTGTCCTGTCTGTAAAATACCTTTCACTCGTCGAGAGGTTCGCCCTGCTCCTCACATGGATAACTTGGTCAGCATCTACAAAAACATGGAAGCTGCTTCTGGAATCAGTATATTTGTCACTCAGAATGCACCTATTACCAAATCTTCAGATGCAGAAAAGCTGTGTGAAGGTGATCCTGACACTGGTAAGGAGGAAGCTGGTGGGACTCATAAAAATCATGCACAGGAGAAAAAAGCACTGAAGAGAAAGAAGTCAAGGAAGAAGATTAAGACCAGCGTGAACAGTTCAGGTTCTGATTTTGCAAAACCTTCTTTTCCTGCTAAGAAAAGGGTTCAGGTGCCACAAAATCTTCTTTCTGAAACTCCATTAAAGAATTTGAAACTTGGAGACTCTCGTAGTGAAATTAACAGTGAGGGGACAGAAAAGGCTTCAGTCATGATAAATGAAAGGCCTCTCCAGAGAGAAAAAGATGATCATGTTCATTCACCTTTCTTTTGGTTAAGAGATGAGGAAGATGGTGGAAAGTTTAGTCAGCGCACTAGTGAAGACCAACTTATTGATGGCTCAACACCAATTCCTCCTTCATTCAGCGATCTCAAAGACTCTGATGATGAAAACCCTTCTAAAGTGTCTCCATCAGATGAGGTGCAAAATAAAGCTGCTGTTAATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCATGCTCCCCTGAATTATTTTCAAGTCCCATCAAAATGCAGGTGGAGGATACTTATGAGACTGATGAAAATCGAGAGGAATTTGTAGCTGTCTCACAAGGGCTGAAAACAAATCAGTTAAGTGCTGCTGCTGGCAGTACAATATTTGAGAATTCCAGAGAAGGAAGTACATTGGCTGATGTGTTACCAAGTGAGTCTTCTCCTCGACTTAAAAGTTCTGATGATCTAAATGGAAAAAAGAAGTCTACAAAGAGAGTCAGAAAAACTAAGGACAAGGCTAGGAAAGAGAAGATTGGGGAACAAAACGATCGAATTAATGGAATGGATGTTGATTCAAATATATCATTAGAAGTCATTAAGGAACAAGCATCAGACTATAAGCAGAAATCTTCTTATTTGGGAAAGACTAATAGAAGGGGCAAGAGGGTTTGTTTCAATACCAGTCCAAATGCAACCCCTCAACCTGCTTGTCCAGTCTCCAATATATTAGGAGTTCTAACCAGTGATGAAATGAAGATGGCCAAGAAACCGCGTACTTCGCCACCATGTAGACAAGAAAATGAGAAGCATTGTCCTCAGAAGATTGCTGGAAAAAGGCAGATGAAAAGATCTGGAAAACAAAAGCTGGATGTGCAGGATCTAGCTGAAGGTTTATCCTCAATGCAAAACCAAACCAATGAGTTTGCAGGTTCTGCTTCATCCATTTTAAGTCTGCAAATGGATAATAATGACAAGGCCTCTAATAGCAGGCAAAGCAAAAGCAACCTCTCCAGAAAAACGATGTCTTGCAATAGAGAATTGAGGAGGACTAAAAGATCAAAACTTTCCTCTGATTGTATCTCTAATGCTAAAAGTGGTGAAAAAATTCAACCTAATGAAAGTATTCAGCAAGGTCCCAATGGTGGGGCTTTGAATGACAAATCAAAAGAGAAACATTGTCATTTTATAGATGAACCGGTTTTAAGGAAATGCGAGAGCCATGTCAAAAAGTATCAATGTGCTTTCTGTCTCTCATCAGAGGAATCGGAGGCTTCTGGCCCCATGGTACATTACTTTGGTAGCAAGCCTGTAACTGCAGATTATGAAGGAGGATCTAACGTCACACATTGTCACAGGAACTGCACAGAATGGGCCCCCAATGTATATTTCGAAGATGATAATGCAATAAATCTTGAAGCTGAAATAAGTAGAAGTCGGAGAATTAAATGTAGTTTTTGTGGACTTAAAGGGGCTGCGCTCGGTTGCTATGAGAAAAGTTGTCGCAGGAGCTTTCATGTTACTTGCGCCAAGTGGACTTCTCAATGTCGATGGGATATGGAAAACTTCGTCATGTTATGCCCTCTACATGCTTCCTCTGTGTTGCCCTATGAAAGTTCAGGATCAAAACAAAGGAGCAATAAATGCACAGCAAGGGAAGGTAAAAGCCATAGTCGCAAAAATGACACTACAAGCCAAAGTCGGATTGCTCACGGATCTTTCAAGAAAATTGTACTTTGTTGTTCTGCTCTATCAGTACAAGAGAGGGGTGTTGTTTCCGAATTTGAAAGAGTATCCAAGGTTACAGTTTTGAAAAATTGGGATTCAAGTGTCACCCATGTTATAGCATCAACAGATGAAAATGGGGCATGCAGAAGGACCCTCAAAGTATTGTTGGGTATCCTGGAGGGAAAGTGGATTCTCAACATTGAGTGGATCAAAGCTTGCATGAAGGAATTGGAACCTGTTGACGAGGAGCGTTTTGAAATTAACGTTGACGTCCATGGAATCAAGGATGGGCCTCGTCTTGGACGACTAAGAGCATTGAACAAGCAACCAAAGCTTTTTGACAGCTACAAGTTTTATTTCATGGGAGATTTTATACCATCATACAAGGGCTATCTGCAAGAACTTGTGACCGCTGCTGGAGGGATGGTGCTGCATAGGAAGCCAGTGTCTGGTGACCAAAAAGCTATATCACCTGATATGCATCCATACCAAACCCTCATAATTTACAGTCTTGAGCTTCCTGATAAATTCAATCCTTCTGAAAGAGATACAATTTTCAGCCAAAGGCGATGTGATGCAGAGGTTCTGGCAAGTTCTACAGGTTCAAAGGTCGCAAGTAATACATGGATTCTGAACTCAATTGCAGCCTGCAAGTTGCAAAGCCTTCCTCAGTAA 3003 0.4113 MGDLERMGRELKCPICLSLFNSAVSLTCNHLFCNACIFKSMKSASSCPVCKIPFTRREVRPAPHMDNLVSIYKNMEAASGISIFVTQNAPITKSSDAEKLCEGDPDTGKEEAGGTHKNHAQEKKALKRKKSRKKIKTSVNSSGSDFAKPSFPAKKRVQVPQNLLSETPLKNLKLGDSRSEINSEGTEKASVMINERPLQREKDDHVHSPFFWLRDEEDGGKFSQRTSEDQLIDGSTPIPPSFSDLKDSDDENPSKVSPSDEVQNKAAVNLFDSEMFEWTQRPCSPELFSSPIKMQVEDTYETDENREEFVAVSQGLKTNQLSAAAGSTIFENSREGSTLADVLPSESSPRLKSSDDLNGKKKSTKRVRKTKDKARKEKIGEQNDRINGMDVDSNISLEVIKEQASDYKQKSSYLGKTNRRGKRVCFNTSPNATPQPACPVSNILGVLTSDEMKMAKKPRTSPPCRQENEKHCPQKIAGKRQMKRSGKQKLDVQDLAEGLSSMQNQTNEFAGSASSILSLQMDNNDKASNSRQSKSNLSRKTMSCNRELRRTKRSKLSSDCISNAKSGEKIQPNESIQQGPNGGALNDKSKEKHCHFIDEPVLRKCESHVKKYQCAFCLSSEESEASGPMVHYFGSKPVTADYEGGSNVTHCHRNCTEWAPNVYFEDDNAINLEAEISRSRRIKCSFCGLKGAALGCYEKSCRRSFHVTCAKWTSQCRWDMENFVMLCPLHASSVLPYESSGSKQRSNKCTAREGKSHSRKNDTTSQSRIAHGSFKKIVLCCSALSVQERGVVSEFERVSKVTVLKNWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILNIEWIKACMKELEPVDEERFEINVDVHGIKDGPRLGRLRALNKQPKLFDSYKFYFMGDFIPSYKGYLQELVTAAGGMVLHRKPVSGDQKAISPDMHPYQTLIIYSLELPDKFNPSERDTIFSQRRCDAEVLASSTGSKVASNTWILNSIAACKLQSLPQ 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi889g00006 1000 FunFam Breast cancer type 1 susceptibility protein homolog 774 880 - -
Sebi889g00006 1000 CDD BRCT_Bard1_rpt1 777 852 - -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 334 352 - -
Sebi889g00006 1000 FunFam Breast cancer associated RING 1 608 733 - -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 97 120 - -
Sebi889g00006 1000 SUPERFAMILY BRCT domain 888 998 IPR036420 -
Sebi889g00006 1000 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 737 767 - -
Sebi889g00006 1000 CDD ePHD 614 730 - -
Sebi889g00006 1000 ProSiteProfiles BRCT domain profile. 884 1000 IPR001357 -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 524 542 - -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 456 476 - -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 456 491 - -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 334 382 - -
Sebi889g00006 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 81 IPR013083 -
Sebi889g00006 1000 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Sebi889g00006 1000 SMART PHD_3 683 731 IPR001965 -
Sebi889g00006 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 733 IPR013083 -
Sebi889g00006 1000 SUPERFAMILY RING/U-box 4 74 - -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 557 584 - -
Sebi889g00006 1000 FunFam Breast cancer associated RING 1 1 83 - -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 96 188 - -
Sebi889g00006 1000 SMART BRCT_7 886 993 IPR001357 -
Sebi889g00006 1000 SMART BRCT_7 771 853 IPR001357 -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 524 587 - -
Sebi889g00006 1000 Pfam BRCA1 C Terminus (BRCT) domain 802 850 IPR001357 -
Sebi889g00006 1000 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Sebi889g00006 1000 Gene3D BRCT domain 774 879 IPR036420 -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 218 262 - -
Sebi889g00006 1000 SMART ring_2 13 50 IPR001841 -
Sebi889g00006 1000 SMART ring_2 684 730 IPR001841 -
Sebi889g00006 1000 ProSiteProfiles Extended PHD (ePHD) domain profile. 611 731 IPR034732 -
Sebi889g00006 1000 SUPERFAMILY BRCT domain 777 872 IPR036420 -
Sebi889g00006 1000 Gene3D BRCT domain 885 993 IPR036420 -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 121 136 - -
Sebi889g00006 1000 MobiDBLite consensus disorder prediction 748 764 - -
Sebi889g00006 1000 ProSiteProfiles BRCT domain profile. 802 863 IPR001357 -
Sebi889g00006 1000 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 2 997 IPR031099 GO:0006281|GO:0006974
Sebi889g00006 1000 Pfam PHD-like zinc-binding domain 652 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi889g00006 Sebi-Chr889 47956 53040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi889g00006 6 87 RAD5 or RAD16-like Gene Family AT5G22750 31.765 1.05e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi889g00006 K10683 - gmx:100804958 1451.8