Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi889g00001 TTCAATGGATTTATGCTCAATAGCATCCCAGTTTTTGTAACTGTGGTTTCATTTGGAATGTTCACCTTACTTGGAGGGGATTTGACACCTGCAAGAGCTTTCACATCACTTTCTCTGTTTGCTGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATATTATAACTCAGGTGGTTAATGCAAATGTATCTCTGAAGCGTATGGAGGATTTGCTCTTAGCAGAAGACAGAGTACTCCTGCCAAATCCACCTCTTGAGCCTAGCTTACCAGCCATCTCGATCAAGAATGGATACTTTTCTTGGGATGCGAAGGCAGAGAGGGCCACATTGTCAAACATAAATTTGGATATACCTGTCGGTAGCCTAGTTGCAGTTGTTGGCAGCACAGGAGAAGGGAAGACATCACTTGTATCAGCAATGCTTGGAGAACTTCCTCCACTTGCAGATTCAACTGTTGTTATGAGAGGAGCAGTTGCTTATGTGCCCCAAATTTCATGGATTTTTAATGCAACTGTACGGGATAATGTTTTGTTTGGTTCTGTCTTTGACCCGACAAGATATGAAAGGGCAATAGATGTGACTGAACTGCATCACGACCTTGAGTTACTGCCAGGTGGTGATCTTACTGAAATTGGTGAAAGAGGGGTAAACATTAGCGGTGGCCAGAAGCAGAGAGTATCCATGGCTAGAGCTGTCTACTCCAATTCTGATGTGTACATCTTTGATGATCCCCTAAGTGCTCTGGATGCACATGTGGCTAGACAGGTTGATAGAATCATTTTGATCCATGAAGGTATGGTGAAGGAGGAGGGAACCTTTGAGGAACTCTCTAACCATGGACCGTTGTTCCAAAAGCTTATGGAAAATGCGGGAAAGATGGAGGAGTATGAAGAAGAAAAGCTAGATACTGAAACCACTGATCAGACTCAGAAGTCCTCTTCAAAACCAGTGGCAAATGGAGCAATTGATGATTATGCAAAGAGTGGAAGTAAACCGAAAGAAGGAAAGTCCATCCTTATTAAACAGGAGGAACGGGAAACAGGTGTTGTCAGTTGGAATGTTCTGATGAGGTACAAAAATGCACTAGGAGGCTCTTGGGTGGTTCTAATACTCTTTGCATGCTATGTCTCAACTGAAGCGTTACGAGTGTCAAGTAGCACATGGTTAAGCCATTGGACTGATCAGGGTGCTTCAGAGGGTTATAATGCTGCCTTCTACAATCTGATATATGCATCTCTATCATTTGGTCAGGTTTTGGTGACTTTAACAAATTCTTACTGGTTAATCATATCAAGTCTTTATGCTGCCAGAAGGTTGCATGAAGCTATGCTTCACTCCATATTACGAGCTCCCATGCTCTTCTTCCACACAAATCCACTTGGAAGGGTAATCAACAGGTTCGCGAAGGATCTAGGCGACATCGATCGCAATGTTGCCCCATTTGTCAACATGTTTCTAGGTCAAGTGTCCCAGCTTCTTTCAACCTTCATCCTGATAGGGATAGTCAGCACAATGTCCTTGTGGGCGATAATGCCATTGTTGGTATTGTTTTATGGAGCATATCTATACTATCAGAGCACAGCTCGTGAAGTGAAGCGATTAGATTCAATTAGCAGATCTCCTGTTTACGCACAATTTGGAGAAGCGCTAAATGGTTTATCGACAATTCGTGCTTACAAAGCTTACGATCGAATGGCAGATATAAATGGGAGATCAATGGACAACAACATCCGATTCACGCTGGTGAACATGAGTGCAAACCGATGGCTTGCAATCCGGTTGGAAACCCTAGGAGGTCTCATGATATGGTTCACTGCAACCTTTGCGGTAATGCAGAATGGTAAAGCAGCGAACCAGCAGGAATTCGCATCCACCATGGGATTGCTTCTCAGTTATGCTTTGAACATCACCAGCTTGCTCACTGGTGTGCTCAGGCTTGCAAGTTTGGCCGAGAATAGTTTAAATGCAGTTGAGAGGATTGGAACTTACATAGATTTACCTTCAGAGGCTCCTTCTGTGATTGAAGATAATCGCCCTCCCCCTGGGTGGCCTTCGTCCGGGTCGATCAAATTCGACGATGTTGTTCTTCGCTACAGGCCTGAACTTCCTCCTGTACTGCATGGCCTCAATTTCTCGATTTTCCCAAGCGATAAGGTTGGCATTGTTGGGAGGACAGGCGCGGGAAAATCCAGCATGCTCAATGCTCTGTTTCGAATTGTGGAATTGGAAAGAGGGAAAATTTTAATTGATGATTGTGATATTGGGAAGTTTGGGTTGGCTGATTTGCGGAAAGTTCTTGGCATTATACCACAGTCTCCCGTTCTCTTTTCAGGAACTGTGAGATTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTTTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAGTTCTCTGGGGCTGGATGCTGAGCTTGTTGGCCCTGCTGACGGGGCTTTATTGCGGAGATCTAAGATATTAGTACTTGACGAGGCAACTGCAGCAGTTGACGTTAGAACAGATGCACTCATACAGAAAACAATCCGAGAGGAATTTAAATCCTGTACCATGCTCATTATTGCTCATCGCCTTAACACCATTATTGATTGTGATCGCATTCTTTTGCTTGATGGTGGTAAGGTTCTTGAATATGATACCCCTGAGGAGCTGCTGTCAAATGAAGATAGTGCTTTCTCGAAGATGGTGCAAAGTACAGGAGCTGCAAATGCCCAATACTTACGCAGCTTAGCACTTGGTGGGGACAAATCAGAAAGAGAAGGGAACAAGCATGTAGATGGTCAGAGAAAATGGCTGGCTTCTTCTCGGTGGGCTGCTGCAGCCCAATTTGCTCTTGCTGTCAGTCTCACGTCATCACATAATGACCTACAACGATTGGAAGTAGAAGATGAGAACAGTATTCTCAAGAAGACAAAGGATGCTCTGATAACTTTGCAAGGGGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGGAATCTTTAGAGCAGCGCCAAATATCCCCGGAGGGATGGTGGTCATCGCTTTACAAGATGATTGAAGGTCTTGCTATGATGAGCAGATTGGCCAGGAACAGGCTCCATCAATCAGACTATGGTTTTGAAGACAGATCAATTAACTTTGATCAAGTTGATATGTAG 3174 0.4408 FNGFMLNSIPVFVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRMEDLLLAEDRVLLPNPPLEPSLPAISIKNGYFSWDAKAERATLSNINLDIPVGSLVAVVGSTGEGKTSLVSAMLGELPPLADSTVVMRGAVAYVPQISWIFNATVRDNVLFGSVFDPTRYERAIDVTELHHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVDRIILIHEGMVKEEGTFEELSNHGPLFQKLMENAGKMEEYEEEKLDTETTDQTQKSSSKPVANGAIDDYAKSGSKPKEGKSILIKQEERETGVVSWNVLMRYKNALGGSWVVLILFACYVSTEALRVSSSTWLSHWTDQGASEGYNAAFYNLIYASLSFGQVLVTLTNSYWLIISSLYAARRLHEAMLHSILRAPMLFFHTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNMSANRWLAIRLETLGGLMIWFTATFAVMQNGKAANQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSVIEDNRPPPGWPSSGSIKFDDVVLRYRPELPPVLHGLNFSIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGKILIDDCDIGKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRSSLGLDAELVGPADGALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEDSAFSKMVQSTGAANAQYLRSLALGGDKSEREGNKHVDGQRKWLASSRWAAAAQFALAVSLTSSHNDLQRLEVEDENSILKKTKDALITLQGVLERKHDKEIEESLEQRQISPEGWWSSLYKMIEGLAMMSRLARNRLHQSDYGFEDRSINFDQVDM 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi889g00001 1057 Gene3D - 85 315 IPR027417 -
Sebi889g00001 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 908 IPR027417 -
Sebi889g00001 1057 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 91 312 IPR003439 GO:0005524
Sebi889g00001 1057 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Sebi889g00001 1057 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 915 - -
Sebi889g00001 1057 Pfam ABC transporter 109 244 IPR003439 GO:0005524
Sebi889g00001 1057 MobiDBLite consensus disorder prediction 294 331 - -
Sebi889g00001 1057 Pfam ABC transporter 705 840 IPR003439 GO:0005524
Sebi889g00001 1057 FunFam Multidrug resistance-associated protein member 4 672 911 - -
Sebi889g00001 1057 Pfam ABC transporter transmembrane region 367 610 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00001 1057 Gene3D ABC transporter type 1, transmembrane domain 1 76 IPR036640 GO:0005524|GO:0016020
Sebi889g00001 1057 Gene3D ABC transporter type 1, transmembrane domain 331 669 IPR036640 GO:0005524|GO:0016020
Sebi889g00001 1057 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 688 909 IPR003439 GO:0005524
Sebi889g00001 1057 Gene3D - 671 911 IPR027417 -
Sebi889g00001 1057 SMART AAA_5 714 894 IPR003593 GO:0016887
Sebi889g00001 1057 SMART AAA_5 118 293 IPR003593 GO:0016887
Sebi889g00001 1057 SUPERFAMILY ABC transporter transmembrane region 365 668 IPR036640 GO:0005524|GO:0016020
Sebi889g00001 1057 FunFam ABC transporter C family member 2 331 669 - -
Sebi889g00001 1057 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 368 651 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00001 1057 CDD ABCC_MRP_domain1 91 255 - -
Sebi889g00001 1057 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 59 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi889g00001 1057 CDD ABC_6TM_ABCC_D2 367 663 IPR044726 GO:0140359
Sebi889g00001 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 287 IPR027417 -
Sebi889g00001 1057 CDD ABCC_MRP_domain2 686 893 - -
Sebi889g00001 1057 SUPERFAMILY ABC transporter transmembrane region 10 71 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi889g00001 Sebi-Chr889 3272 11716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi889g00001 685 915 Calmodulin-binding Proteins AT2G36910 28.800 2.15e-21 99.0