Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi888g00004 ATGGCAGGAAACATGGGATGGGGTGTAGCAGAAGAAGATGGATGGAGGAAGGGACCTTGGACTGCTGAGGAGGACAGGTTACTCAATGAGTATGTCAAGTTGCATGGTGAAGGAAGATGGAACTCTGTTGCTAGGCTTACAGGGCTCAAAAGAAATGGGAAGAGTTGCAGATTGAGATGGGTGAATTATCTGAGACCAGACCTTAAGAAGGGTCAGATAACACCACAAGAAGAAAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTACCAGGAAGAACTGACAATGAGATAAAGAATTATTGGAGGACCCATTTCAAGAAAAAGGCAAAAACCCCTTCTGATGCTGCTGAAAAGGCTAAAATTCGTTCTTTCAGGAAGCAGCAATTTAGACAGCAACAACAGAATTTGATGCAGCAGCAAGTTCAGCAGCAGCAACAACAATTGCAATTCAACTTGGACATGAAAGGGATCATAAACTTGCTTGAGGAAGATGATTATATAGTTCCTTCTATATCTCAAGAGACACAAGGATTGGTCAGCATGTACCCAAACACACCAGAACAGTTGAGCTACTTTATGCTCAATGGTAATGTCTCTGCACCAGAGTCCTCCTCAAATGAAGAAATTTTGTGGGATGGACTGTGGAACTTGGATGATGATGATGTTCTTTGCAATTCAATGCAGTTACTGCTACAAACAAAGCCAGTCTGCACAATTTAG 750 0.4253 MAGNMGWGVAEEDGWRKGPWTAEEDRLLNEYVKLHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKTPSDAAEKAKIRSFRKQQFRQQQQNLMQQQVQQQQQQLQFNLDMKGIINLLEEDDYIVPSISQETQGLVSMYPNTPEQLSYFMLNGNVSAPESSSNEEILWDGLWNLDDDDVLCNSMQLLLQTKPVCTI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi888g00004 249 CDD SANT 74 115 IPR001005 -
Sebi888g00004 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Sebi888g00004 249 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Sebi888g00004 249 Gene3D - 74 118 - -
Sebi888g00004 249 Coils Coil 136 156 - -
Sebi888g00004 249 Gene3D - 17 69 - -
Sebi888g00004 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Sebi888g00004 249 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 180 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sebi888g00004 249 CDD SANT 19 64 IPR001005 -
Sebi888g00004 249 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Sebi888g00004 249 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Sebi888g00004 249 FunFam MYB-related transcription factor 74 118 - -
Sebi888g00004 249 FunFam Myb transcription factor 17 69 - -
Sebi888g00004 249 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Sebi888g00004 249 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Sebi888g00004 249 SMART sant 16 66 IPR001005 -
Sebi888g00004 249 SMART sant 69 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi888g00004 Sebi-Chr888 67401 68566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi888g00004 12 228 MYB Transcription Factor Family AT3G24310 60.776 5.93e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi888g00004 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi888g00004 K09422 - gmx:100782089 353.984