Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi888g00002 ATGGAGCAGGAAGAGCACGAAGTGTACGGTGCAGACATTCCCGACGAAGAGGTTGAGATGGACGCAGACATAGAACAGCAAGAAGAAGAACTTGCCCCCAATCATCCAAACAAGGACTTGGAGGACATGAAGAAGAGGTTGAAGGAGATCGAAGAAGAAGCTAGCGCCCTCCGCGAAATGCAAGCCAAGGTTGAGAAAGAGATGGGCGCTGTCCAAGATTCGTCTGGCTCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGGGTGACTATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTGGAGTTTGTTGAGATTGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGAATGAAACAGTATTATGGAAGAAGACCTACTGGTTTCCGATCTAGGAGGCCTTTCATGCCTTCTCCATTCTATCCACCATATGGTTATGGTCTGTGGCATCTCAAAGTAACAGATGGATTTGTTTGTGTGATGATACTGCTGACAGCACTTCTCAGCCAGAGCGACACCATCAGATGCTTAAGTGGGCATCAGATGCTTAAGTGGGGATTAGCTCCATACCCTAAAGGTGTGGCCATGTAG 750 0.4547 MEQEEHEVYGADIPDEEVEMDADIEQQEEELAPNHPNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGSSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPTGFRSRRPFMPSPFYPPYGYGLWHLKVTDGFVCVMILLTALLSQSDTIRCLSGHQMLKWGLAPYPKGVAM 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi888g00002 249 Coils Coil 37 67 - -
Sebi888g00002 249 SMART rrm1_1 91 162 IPR000504 GO:0003723
Sebi888g00002 249 FunFam Polyadenylate-binding protein 1 84 170 - -
Sebi888g00002 249 MobiDBLite consensus disorder prediction 1 27 - -
Sebi888g00002 249 MobiDBLite consensus disorder prediction 62 88 - -
Sebi888g00002 249 CDD RRM_II_PABPs 91 162 - -
Sebi888g00002 249 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 20 183 - -
Sebi888g00002 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Sebi888g00002 249 SUPERFAMILY RNA-binding domain, RBD 80 190 IPR035979 GO:0003676
Sebi888g00002 249 MobiDBLite consensus disorder prediction 28 45 - -
Sebi888g00002 249 MobiDBLite consensus disorder prediction 1 45 - -
Sebi888g00002 249 Gene3D - 11 172 IPR012677 -
Sebi888g00002 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi888g00002 Sebi-Chr888 17177 23673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi888g00002 91 162 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 1.56e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi888g00002 K14396 - gmx:100527545 385.956