Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi887g00002 ATGGACCAGAGGGGTGTTGCTGCCTCATCCCACTTTTTTGATGACATTTCTTATGCTTCTGAGAGGAATGTTGGATTGTGGAAGCCAAAATCTATTCATGATCATTATCCAGAAGGAAAGAGTGAAATGGTGGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCTTGGAACAAGTGCAAAAACAGGCTTGCCAATGTCGCAGACTAGTCTATCTGGTTCAGAAAAGCTACACTTTGGTGGAGAAGCAGGCATTATAGGCATGCTGAAGGATTCTAAGGAATCATTGAATTATCATCCGAGATCATGGTCTGATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTTTAATTGGGAACAGGATTGTCACCAATGCAGGCTCACGTGAAAGTAGTCTATTCTCAAGTTCACTGTCTGATATATTTAGCCAAAAGTTGCGGTTATTGGGGAATGATGTTCTGTCTGATCAGCCCATTACTGTTGGTCCCTTTACTGAGGAAGAACCATATAAATCTCCTGAAGAAATTGAAGCTGACACTATTGGAAGTCTCCTTCCTCATGAAGATGATCTGTTTTCTGGTGTCACTGATGAGTTAGGGAGCAGTGCTCATGCTAGAACGAGTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAACATCTAGTTTCAGGAAAAATAACCAGTTGCATGGATGGGGATCCTGGTTACTTTGGGGGTTCTAAAGGAAAATTTCCTGTAAATGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGTGTAGAAGATTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGAGATCCGAACCATTTATACTGCCTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGACCTAAAGGCAGCACAAAGTGCAATGAAAGCACTTCAAAATAGGTCATTGAAATCTAGGAACCTTGATATACATTATTCAATTCCAAAGGGAAATGCTCCAGAGAAGGATATTGGCCATGGTACCCTGATGATATCTGGTCTTGATACATCTGTTTTGAATGATGAACTTAAACGTATTTTTGGGTTTTATGGAGAAATTAAAGAAATTTATGAATATCCAGAAATGAATAATATCAAATACATTGAGTTTTATGATGTCCGAAGTGCAGAATCTTCTCTACGTGCATTGAATGGGATCTGCATTGCTGGGAAACACATCAAACTTGAACCTGGCCATCCTAGGATTGCAACATGTATGATGCAGCAGTCTCAAAAAGGACAAGATGAACCTGATCTTGGTCATAATCTCAATGACAACTTATTATTAAGACAGAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGCAGCTTGGAAAATGGATACAGTCAAAGATTTCAATCTGCATCACGGCTACCTTTGAATGCTTTCATTGATAACGCATTCTTTAATGTGAATTCTAGCTTACACAAGACTGCAAGAGGGGCATCTGTTGGAAAAGTATCTGGTGTTAGTGAGTCCATTAACGTTGTTGATGCAATGCAATTTGCATCCGTTCCGAGATTCCATCCTCATTCTTTACCAGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTACAACTTTTCAAGCACCATTAACATGGCTGCAAATATTGGAACTGGATCAACAGAAGTGTCTGACAGCAGGCACATTCAGGGAATGGGCTCAACTGGGAACCTGGCAGAATTTAATGGAGGAGGAAATGGGAGCCACCCCCGTCAACTTTATCATATGTGGAATGGCTCCAACTTGCATCAGCAACCTCCATCAAATGGCATGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTTGTGCTCCATGTCCTCCACAGATTCCCAGCTTTCCCAGGACACTGCCTCATGTACTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGACAGCATTCTTACATGGGAGAGTCTCCTGATGCTTCTGGTTTTAGATTGGGCTCTCTAGGAAGTGCTGGTTTTCATGGTAGCTGGCAGTTGCAACCTTCAGATTTTTCTGGCAACATGTTTTCCCATGTTGGTGGGAATGGTACTGAATTGACATCCAATGCCGGGCAGGGCTCTCCTAAGCAGTTGTCTCATGTTTTCCCCGGGAGACTTCCCATGACTTCAATGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTTGCTGTACTTGCATATGCCCGGATTCAAGGAAAAGCTGCTCTTATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAAGATAAACGCTGCCGTCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTACCAATATTAGACCGAGGCCTGGAAAAACACGCATTAATGGTAATGAGGAGAATCGCAACCAAGGGAATCCTTCTACTTTGGCAACTGGAGAGGAGTCTGCTAATGGAATAGACTCTTCAATGAGTTCTTCAAGGGATGCTGACTGA 2727 0.4191 MDQRGVAASSHFFDDISYASERNVGLWKPKSIHDHYPEGKSEMVASPGSILNASSPLGTSAKTGLPMSQTSLSGSEKLHFGGEAGIIGMLKDSKESLNYHPRSWSDVHRQPASSSYGLIGNRIVTNAGSRESSLFSSSLSDIFSQKLRLLGNDVLSDQPITVGPFTEEEPYKSPEEIEADTIGSLLPHEDDLFSGVTDELGSSAHARTSDDFEDFDLFSSGGGMELEGDEHLVSGKITSCMDGDPGYFGGSKGKFPVNEQSSRTLFVRNINSSVEDSELKALFEQYGEIRTIYTACKHRGFVMISYYDLKAAQSAMKALQNRSLKSRNLDIHYSIPKGNAPEKDIGHGTLMISGLDTSVLNDELKRIFGFYGEIKEIYEYPEMNNIKYIEFYDVRSAESSLRALNGICIAGKHIKLEPGHPRIATCMMQQSQKGQDEPDLGHNLNDNLLLRQKGVSSGVIASGGSLENGYSQRFQSASRLPLNAFIDNAFFNVNSSLHKTARGASVGKVSGVSESINVVDAMQFASVPRFHPHSLPEYRDSLANGSPYNFSSTINMAANIGTGSTEVSDSRHIQGMGSTGNLAEFNGGGNGSHPRQLYHMWNGSNLHQQPPSNGMLWQKTPSFVNGACAPCPPQIPSFPRTLPHVLRASHIDHHVGSAPVVTASPWERQHSYMGESPDASGFRLGSLGSAGFHGSWQLQPSDFSGNMFSHVGGNGTELTSNAGQGSPKQLSHVFPGRLPMTSMYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGTNIRPRPGKTRINGNEENRNQGNPSTLATGEESANGIDSSMSSSRDAD 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi887g00002 908 Gene3D - 346 440 IPR012677 -
Sebi887g00002 908 CDD RRM3_MEI2_like 744 820 IPR034454 -
Sebi887g00002 908 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 415 IPR000504 GO:0003723
Sebi887g00002 908 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 329 IPR000504 GO:0003723
Sebi887g00002 908 SMART rrm1_1 264 332 IPR000504 GO:0003723
Sebi887g00002 908 SMART rrm1_1 349 417 IPR000504 GO:0003723
Sebi887g00002 908 PANTHER RNA RECOGNITION MOTIF-CONTAINING 41 899 - -
Sebi887g00002 908 CDD RRM1_MEI2_like 262 337 IPR034453 -
Sebi887g00002 908 SUPERFAMILY RNA-binding domain, RBD 742 819 IPR035979 GO:0003676
Sebi887g00002 908 MobiDBLite consensus disorder prediction 874 908 - -
Sebi887g00002 908 Pfam RNA recognition motif 2 742 828 IPR007201 -
Sebi887g00002 908 FunFam Protein MEI2-like 1 347 441 - -
Sebi887g00002 908 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 336 IPR000504 GO:0003723
Sebi887g00002 908 Gene3D - 254 345 IPR012677 -
Sebi887g00002 908 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 421 IPR000504 GO:0003723
Sebi887g00002 908 SUPERFAMILY RNA-binding domain, RBD 260 419 IPR035979 GO:0003676
Sebi887g00002 908 MobiDBLite consensus disorder prediction 846 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi887g00002 Sebi-Chr887 78709 84997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi887g00002 260 414 Eukaryotic Initiation Factors Gene Family AT3G16380 24.432 2.68e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi887g00002 - - gmx:100801025 1421.76