LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi886g00001	ATGGAAGCCAAAGGTGGAGAAGTTAGAAGGCTTCACATAATCTATTTCCTCAGTCACATGGGTGGTCGTGCAGAGCATCCACATCTCATTCGTGTTCTCCATTTAGCTCGTAATGGGGTTTATCTCCGAGATGTTAAGAGATGGCTTGGGGAATTGAGAGGAAAAGACTTGCCTGAAGCTTTTGCTTGGTCCTACAAGAGGAGGTACAAGACTGGATATGTGTGGCAAGACTTATTAGATGACGACCTCATAACCCCCATTTCTGATAATGAATACGTCCTCAAAGGATCACAAATCAACCCTACCCCATTTGAAACTCGTTCACTTGATGAAAACAAAATTGCTAATGACACACTGGCTGAAAAAAAATCCCCTCAAGTACAAGTTGTAGAGGACAAACAGCAGCCATCTCAAGCTGAAGAAGAACCTCAAATTCAACTAGACCTAAATTCAAAAAAGAATTCTCTAACAAAAGTTTCATCAGAAATCAGCCAGGATTCATTGGTCTTCAGCTCAGACAGGTCATCTGTGACAGATGATGACTCTTCTTCTAAGGTTGAAGAAGAGAAGCTCAATGAACAGAACAATGGGAAGTTAGAGAGTTTCTCATTGCCTTCCTTGTATCACAATCTGTTGAGTAAGAAGGGTATTAAAGATGACCAGAATAAAATTGACACACCTGATTCATCCTTTTCTACTACATCATCATCATCATCCCAATCCTCTTTTACTAAGATCAGAAGCAATTCTACTAGAGTTTCTAGTGTTTTCCGAAATTGGATTAGTTGTGGGACTGTGGAAACAAATGATGCAGCCGTAGTCCTGATGAACCAGGCTAATAAAATTGCCTATAAGCAGCCTAACAACATACCAGAAAAAAGGGCTGAGATTTGTAAAGGAGACAGATTGGGAGGATCAGCTAGGTGTTTTGGGACTTCTTGGAATTATCATCACCAGAAAGAACAATATGGGGCCAGAAAAAGCTGTGATGGAGAGGAGACAAGCAGGAGCAGGAAAAAGTTAGGCGATTTCATGAATCAAACTCATTACAAACCATTTGGGGGACCAATTTGCTCGCAATGTGGGAAGTCTTTCAAGCCTGAGAAAATGCACAAACACATGAAGTCCTGTAAAGGAATGAAAGCCACAGGAACGTCAGCTGCAACTGCTGCTGAGGAGACACAGCTTCAGAGATCATCAACAACTTTGTGCAATAAAGATTACCTTTTGACCAACTAA	1239	0.4108	MEAKGGEVRRLHIIYFLSHMGGRAEHPHLIRVLHLARNGVYLRDVKRWLGELRGKDLPEAFAWSYKRRYKTGYVWQDLLDDDLITPISDNEYVLKGSQINPTPFETRSLDENKIANDTLAEKKSPQVQVVEDKQQPSQAEEEPQIQLDLNSKKNSLTKVSSEISQDSLVFSSDRSSVTDDDSSSKVEEEKLNEQNNGKLESFSLPSLYHNLLSKKGIKDDQNKIDTPDSSFSTTSSSSSQSSFTKIRSNSTRVSSVFRNWISCGTVETNDAAVVLMNQANKIAYKQPNNIPEKRAEICKGDRLGGSARCFGTSWNYHHQKEQYGARKSCDGEETSRSRKKLGDFMNQTHYKPFGGPICSQCGKSFKPEKMHKHMKSCKGMKATGTSAATAAEETQLQRSSTTLCNKDYLLTN	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi886g00001	412	MobiDBLite	consensus disorder prediction	226	245	-	-
	Sebi886g00001	412	MobiDBLite	consensus disorder prediction	123	152	-	-
	Sebi886g00001	412	MobiDBLite	consensus disorder prediction	178	195	-	-
	Sebi886g00001	412	MobiDBLite	consensus disorder prediction	170	198	-	-
	Sebi886g00001	412	Pfam	Protein SOSEKI, plant	12	270	IPR010369	-
	Sebi886g00001	412	MobiDBLite	consensus disorder prediction	218	245	-	-
	Sebi886g00001	412	PANTHER	UPSTREAM OF FLC PROTEIN (DUF966)	5	400	IPR010369	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi886g00001	Sebi-Chr886	63454	65893	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Sebi886g00001		DUF966	7e-37	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi886g00001	-		-	gmx:100785001	559.296