Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi883g00007 ATGGGGTTGCTTTTGAAAACGGGGAAGAAAAACACCCTGTTTAGTTCTGAAGAGATATTTAAGAGGTCTGGTGATTTGTATGTTCCTGGGATGTATCTTTCAAAGGGTTGTAAGTGTGAAGTTGTTCTCTGCTTTTTGTTCTGCTGCTATTTCCTATTGGCTGCTGGACAGAGTACTGACCCCAACGAAGTTGACGCATTGAGAGCCATAAGAGAGAAATTGATTGATGTTAATGGAAATTTGAGCAGCTGGAGTCGTGGAGACCCATGTACATCCCAGTGGACAGGAGTTTTGTGCTCCAATAGAACATCGGATGATGGCCATCTACATGTTCTACAATTGCAACTACTGAATATGAACTTGTCTGGAACTTTGGCACCTGACATTGGCCGCTTATCTTGTCTGCAAATATTGAGCTTTATGTGGAACAACATAAGTGGGAGTATACCGAGTGAAATTGGCAACATCAAAACTTTAAAACTCTTTCACATGAACAACAATTCACTTACTGGCCAAATCCCACCAGAGCTTTATCGCTTAGGAAGCCTTTTTCACCTTCTGCTTGACAACAATAAATTAACAGGATATCTCCCCTCCAACCTCTCTGAGATGCCAAACTTAAAGATACTTCAACTTGATAACAATAACTTTGGTGGAAATAGCATTCCAGATTCTTATGCCAACATGTCAAAATTATTGAAATTGAGCCTTAGGAACTGCAACTTGACAGGACAAATTCCTGATTTAAGCAGGATACCACACCTTAGTTATCTTGACCTCAGTTTCAATCAGTTGAATGGATCAATTCCTGCTAATAAGCTTTCTGAAAATATCACAACTGTTGATTTATCAAACAACAAGCTGACTGGAACTATTCCATCCTACTTTTCTGGTCTTCCTCGTCTTCAGAAATTGTCAATTGCAAACAATTTATTGAGTGGCAATGTTTCCTCTACCATTTGGCAAGACAGGACTTTAAATGCAACAGAAATGCTTCTCTTGGACATGCAAAACAATCAACTTACAAGCATATCAGGAAGTACAAATCTTCCTCCAAATGTCACACTCTTGCTTAGAGGAAATCCTTTATGCACAAATAACAACACTCTAGCTCAGTTCTGTGGAGCTGGAAGTGACAATAACATCAATGGCAACTTCAATGGTACCTGTCCTAGTCAACCATGTCCCCCTCCTTATGAATACAATGCGCAATGTGTCTGTGTAGCCCCTTTGCTTGTTCATTACCGGTTGAAAAGTCCAGGATTTTCAGATTTCCGTACATATGTGGAACCATTTGAAAGCTTCCTAACAGATGGTCTTAATATACATAATAATCAGCTACAGATTAATAGTTTTACATGGGAAGAAGGGCCTCGGTTGAAAATGGACTTGAAGCTTTTTCCTGTATATGTTGATAACGGAAGCTCTCATCTTTTCAATACAAGTGAAGTTCATCGGATCAGAAACATGTTCAGAGAATGGGATATGCACGATAATGACTTGTTTGGACCTTATGAACTTCTAGATTTCATTCTCCTAGATCCTTACAATGATGATCATAATGCACATGTTGCTGTTAAGTTAAAAGCAACTTTAAACAAAGCCATGATTGATACATCTTCAAGTTCAGGGATAAGCAAAGGTGCACTAGCTGGAATAGTCTTAGGTGCAATTGCTGGTTCAGTTACATTATCTGCAATTGTTACCATTCTTATATTAAGATTACGCTTCAAAGATTATCGTACACTTTCCAAACGGCTTAAAGCATCTAGGATCTCAATAAAAATTGATGGTGTAAGATCATTTGATTATGAAGAAATGGCCTTGGTTACGAACAATTTTAGTGAATCTGCTCAAATTGGACAAGGGGGATATGGAAAGGTTTATAAAGGTACTCTTTCTGATGGAACTGTTGTTGCCATAAAACGTGCACAAGAAGGTTCACTGCAAGGTGAGAGGGAGTTTCTTACAGAAATACAATTGCTATCAAGATTACATCATCGCAACCTTGTGTCTTTGATTGGATACTGTGATGAAGAGGGTGAACAGATGTTGGTTTATGAATATATGCCAAACAGAACACTAAGGGATCACCTTTCTGCTTCTTCAAAGGAACCTCTTAGCTTTTCCATGAGATTGAAGATTGCTCTAGGGTCAGCTAAAGGTCTTCTGTATCTACACACAGAAGCTGATCCTCCAATTTTCCACAGAGATGTTAAGGCCAGTAATATATTATTAGACTCTAAGTTCACAGCAAAAGTTGCTGATTTTGGACTTTCAAGACTTGCCCCAGTTCCAGATGTTGAAGGCAATCTGCCTGGTCATGTATCTACAGTGGTAAAGGGGACACCGGTTAATGTGGCATACCAATCTGGTGGAATATTGTCTACTGTTGATAAACGTTTGGGATCTTTTCCTTCTGAGTCTTTGGAGAAATTTTTTATTTTGGCTTTGAAGTGTTGCAAAGATGCACCAGATGAACGGCCTAAAATGGCAGAAGTTGTTAGAGAGCTTGAAAACATTTTGTCTATGATGCCTGAGTTTGATGCCATTGCTAAGGGAGTTGAATATCCTGCAAGTGATTCTGGATCAGTATTTAGTTCACAACCTTCATCATCTACTATAAAGACTCCATTTATTTCATTAGATGTGTCAGGTAGTGACCTTGTTAGTGGAGATATACCAACCATTAGACCAAGATAG 2703 0.3881 MGLLLKTGKKNTLFSSEEIFKRSGDLYVPGMYLSKGCKCEVVLCFLFCCYFLLAAGQSTDPNEVDALRAIREKLIDVNGNLSSWSRGDPCTSQWTGVLCSNRTSDDGHLHVLQLQLLNMNLSGTLAPDIGRLSCLQILSFMWNNISGSIPSEIGNIKTLKLFHMNNNSLTGQIPPELYRLGSLFHLLLDNNKLTGYLPSNLSEMPNLKILQLDNNNFGGNSIPDSYANMSKLLKLSLRNCNLTGQIPDLSRIPHLSYLDLSFNQLNGSIPANKLSENITTVDLSNNKLTGTIPSYFSGLPRLQKLSIANNLLSGNVSSTIWQDRTLNATEMLLLDMQNNQLTSISGSTNLPPNVTLLLRGNPLCTNNNTLAQFCGAGSDNNINGNFNGTCPSQPCPPPYEYNAQCVCVAPLLVHYRLKSPGFSDFRTYVEPFESFLTDGLNIHNNQLQINSFTWEEGPRLKMDLKLFPVYVDNGSSHLFNTSEVHRIRNMFREWDMHDNDLFGPYELLDFILLDPYNDDHNAHVAVKLKATLNKAMIDTSSSSGISKGALAGIVLGAIAGSVTLSAIVTILILRLRFKDYRTLSKRLKASRISIKIDGVRSFDYEEMALVTNNFSESAQIGQGGYGKVYKGTLSDGTVVAIKRAQEGSLQGEREFLTEIQLLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNRTLRDHLSASSKEPLSFSMRLKIALGSAKGLLYLHTEADPPIFHRDVKASNILLDSKFTAKVADFGLSRLAPVPDVEGNLPGHVSTVVKGTPVNVAYQSGGILSTVDKRLGSFPSESLEKFFILALKCCKDAPDERPKMAEVVRELENILSMMPEFDAIAKGVEYPASDSGSVFSSQPSSSTIKTPFISLDVSGSDLVSGDIPTIRPR 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi883g00007 900 Gene3D Ribonuclease Inhibitor 275 364 IPR032675 -
Sebi883g00007 900 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524
Sebi883g00007 900 SMART serkin_6 614 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi883g00007 900 Gene3D Phosphorylase Kinase; domain 1 585 689 - -
Sebi883g00007 900 FunFam Nuclear pore complex protein NUP107 60 220 - -
Sebi883g00007 900 PANTHER RECEPTOR-LIKE PROTEIN 55 76 842 - -
Sebi883g00007 900 Pfam Protein tyrosine and serine/threonine kinase 617 762 IPR001245 GO:0004672|GO:0006468
Sebi883g00007 900 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672|GO:0006468
Sebi883g00007 900 SUPERFAMILY Protein kinase-like (PK-like) 599 850 IPR011009 -
Sebi883g00007 900 Gene3D Ribonuclease Inhibitor 60 220 IPR032675 -
Sebi883g00007 900 Pfam Leucine rich repeat N-terminal domain 61 100 IPR013210 -
Sebi883g00007 900 FunFam Leucine-rich repeat protein kinase family protein 578 689 - -
Sebi883g00007 900 Pfam Leucine rich repeat 277 314 IPR001611 GO:0005515
Sebi883g00007 900 Gene3D Ribonuclease Inhibitor 221 274 IPR032675 -
Sebi883g00007 900 Gene3D Transferase(Phosphotransferase) domain 1 690 787 - -
Sebi883g00007 900 Gene3D Transferase(Phosphotransferase) domain 1 788 851 - -
Sebi883g00007 900 ProSiteProfiles Protein kinase domain profile. 614 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi883g00007 900 SUPERFAMILY L domain-like 59 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi883g00007 Sebi-Chr883 63687 74408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi883g00007 48 847 Receptor kinase-like Gene Family AT5G01950 48.786 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Sebi883g00007 PK_Tyr_Ser-Thr 2.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi883g00007 - - gmx:100801035 1181.39