Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi881g00006 ATGATTGCTTCGGATATGCCATTTTCAACTGTGCCATACTCCTTCTCTCCTGTGACTGCTGATGATATAACAAAGAAAGGGGAACAATTTGATTATATGATAGATTTTGTTGGAGTGTTAACATCAATGTCTGCTGAGAAACACAACGTGCTGTTTGGTGTTATGAAGAGATCTATCTTCCTTGAAATCCATGACCACACGGGAAAGATTCAATGTGTCCTTTATGATGAGTACGTTGATTTGGTTCAAAATCATGTTAAGGTTCACGGTCGAGCAAGTCCTATTATAGTGATTCAGTTTGCTAAGCTAAGTCCAGTTGGAGGTGTCTTTTTTGGGGCATCTAACATACAGAACATGTTCAGTGCAACAAGGGTGTTGTTTAACCCTGTGCTTCCAGAGGTTGTTGAATTTAGGAGGAGTACTGCCTTGCTTGGCATTGAGCTGGAGGGGCGAATTGGATTTATGAAAAGGATAACATCTTATGTATCAGTTAAAGATGATTTCCTTAATTTGCATCCACCAAAGAAAATTATTGAGCTTCGTAGTTCCCGACAGACTGGATTCTTTATTGTGTGTTGGAAGGTTGTCAAGATTGTGAATGATAGTAGGTGGTGGTTTCTAGAATGTAAATGCCGAAATCCAGTGATTCATAATGAAGGGATTTATTTTTGCTCTGAATGTCGTAGGAACGTTGTGACTATTATTCCCCGTTACCGGCTTAAGATTGAGGTCTATGATTCAAGTGACAGTACCCATGTCATTTTGGATGATTCTGATGCTGAACGTTTGTTGAAAAAGTCCTGCAAATCTCTCATGGATGAAATTGAAGATCCATTAGCTAAGACTCTGCCCCCACTATTTCACTGTCTCATTGGGAAGCAAGTTCTTTTCAAAATCCACAAATTTGTAGCTCTTGATGGCGTTGGTCAGGATAATTTTAAGATTATCAGAATATGTGATGATGTGGATGTCATTTCCTATTTTTTAAGGGCTGAGCCCTTTATAATACCCAAGCAAGTTGAGGGGGCGCGTGAAATTGATTTTATTTCTTTGGTTCGTGGTGTGAAGGAAGAAACCTGCACTGGCAGTTCTCGAGTTTGTCCTGGTATCAAAAGTCAACTTCGTGCATGTACTACTTCCAAAACACTTGATCCTGCACCTCATACTGACATTAGAAGAGTTACCAAAAGGTTGGAGATTGAGTTCCAGAAAGCACGCAATGCTGGAAACATGCGTTACTGGAACTCCAGGGTGATGGCTCCTGCTAGACGCAAGTTCTTTGGTGTTTTCCGAACAAATGAGGAACATATTCCAATTCCAACCCGGTTTTTTCAACGATTTGGCGATGGGTTAGATGAAATTGTTTTGCTCAAGGATCCTGTTGGTAACATGTTCCCGGTTTATATATGCATTAGGCATGGCCGTGCTTATTTCTGTCTAGGGGTGAATAAGCTGAGGATTTCGTATAATATTTTCTCCACGTTCACTATCTGGTTCAAGTATGTTACTGACTGGTATTTCAAGATAAGGGTTTTTGGCTCTGATGCACTGGAGATTGATTATCCTGTGGTTATGTGA 1578 0.4024 MIASDMPFSTVPYSFSPVTADDITKKGEQFDYMIDFVGVLTSMSAEKHNVLFGVMKRSIFLEIHDHTGKIQCVLYDEYVDLVQNHVKVHGRASPIIVIQFAKLSPVGGVFFGASNIQNMFSATRVLFNPVLPEVVEFRRSTALLGIELEGRIGFMKRITSYVSVKDDFLNLHPPKKIIELRSSRQTGFFIVCWKVVKIVNDSRWWFLECKCRNPVIHNEGIYFCSECRRNVVTIIPRYRLKIEVYDSSDSTHVILDDSDAERLLKKSCKSLMDEIEDPLAKTLPPLFHCLIGKQVLFKIHKFVALDGVGQDNFKIIRICDDVDVISYFLRAEPFIIPKQVEGAREIDFISLVRGVKEETCTGSSRVCPGIKSQLRACTTSKTLDPAPHTDIRRVTKRLEIEFQKARNAGNMRYWNSRVMAPARRKFFGVFRTNEEHIPIPTRFFQRFGDGLDEIVLLKDPVGNMFPVYICIRHGRAYFCLGVNKLRISYNIFSTFTIWFKYVTDWYFKIRVFGSDALEIDYPVVM 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi881g00006 525 Gene3D - 171 318 IPR012340 -
Sebi881g00006 525 CDD RPA1_DBD_C 188 330 IPR047192 -
Sebi881g00006 525 Gene3D - 13 143 IPR012340 -
Sebi881g00006 525 SUPERFAMILY DNA-binding pseudobarrel domain 435 515 IPR015300 -
Sebi881g00006 525 Pfam Replication factor-A C terminal domain 192 276 IPR013955 -
Sebi881g00006 525 SUPERFAMILY Nucleic acid-binding proteins 183 300 IPR012340 -
Sebi881g00006 525 CDD RPA1_DBD_B_like 35 140 - -
Sebi881g00006 525 Gene3D - 418 516 IPR015300 -
Sebi881g00006 525 SUPERFAMILY Nucleic acid-binding proteins 15 141 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi881g00006 Sebi-Chr881 190049 194521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi881g00006 3 273 Core DNA Replication Machinery Family AT5G08020 24.150 9.55e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi881g00006 - - lja:Lj1g3v3385890.1 228.409