Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi880g00017 ATGGGCCAGTGCTACGGCAAGACCAATCCCACACCGGAAAATGACAACACCACCGCCACAGTTGCCGGACCCAGCGACCTCCCGCTCTCTCCGGCGCCGTCCTCCACCGCCGGAACCGGGAACGGATTTCCGTCGGTGAAGGGCACGCCAGCTCGGTCCTCCTCCGCCGCGAGCCCCTGGCCCAGCCCGTACCCTCATGGCGGCGGAGTGACGCCGTCTCCGGCGAGGGGTACGCCGAGGAGGTTTTTCCGGCGACCGTTTCCGCCTCCTTCGCCTGCGAAGCATATAAGGGCGTCGCTGGCGAAGCGGCTGGGTCACGCGAAGACGCCGAAGGAAGGGCCGATACCGGAGGAGGAACGGGTGGCGGAGGAGACGCTGGATAAGAGCTTTGGGTATAGCAAAAATTTTGGGGCAAGGTTTGAGCTTGGGAAGGAAGTGGGGAGAGGGCATTTTGGTCATACTTGCTATGCCAGGGGCAAGAAGGGTGACCTAAAAGACCAACATGTAGCTGTTAAGATTATTTCCAAGGCCAAGATGACCACAGCAATAGCAATTGAAGATGTTCGTAGAGAGGTGAAGATATTAAAAGCACTATCTGGCCATAAGCATCTTGTCAAATTTCATGATGCCTTTGAGGATGCCAACAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAAGTATACAGAGGAGGATGCCAAGGTTATAATTTTGCAGATCCTTAGCGTAGTTGCTTTTTGTCATCTTCAAGGCGTTGTGCACCGTGACCTGAAACCCGAGAATTTCCTCTTCACTTCAAGAAGTGAAAATGCTGATATGAGGCTTATTGATTTTGGTCTGTCTGACTTCATCAGGCCAGATGAACGGCTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCATATAGTCTGGAGGCAGATATATGGAGTATTGGTGTTATTACCTATATCTTGTTATGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTTCTTCGAGCTGAACCTAACTTTGATGATTTACCTTGGCCATCTGCCTCTGCAGAGGCCAAGGACTTTGTAAAAAGGCTCCTAAACAAGGACTACAGGAAAAGAATGACTGCTGTCCAAGCTCTAACTCATCCTTGGTTGAGGGATGACAGCCGTCCCATCCCTTTGGATATATTAGTCTATAAACTAGTGAAGGCTTATCTTCATGCGACACCATTCAAACGTGCAGCATTGAAGGCCCTTTCAAAAGCCCTGACAGAGGATGAATTGCCCTATCTTAGGGCACAATTCAGACTATTGGAACCAAATAGAGACGGGCACATCTCCCTTGAGAATTTCAAAATGGCTCTTGTGCGCCATGCAACTGATGCCATGAGTGAGTCCAGGGTTTTTGATATCATACATGCGATGGAACCACTTGCCTATAGGAAGATGGACTTTGAAGAATTTTGTGCAGCTGCAATTAGCATATATCAATTGGAGGCACTTGATAGGTGGGAAGATATTGCCTCTACTGCTTTTGAACATTTTGAGAGAGAGGGCAACCGTCTGATATCAGTTGAAGAATTAGCAAGAGAGTTGAATCTTGGTCCCACAGCTTACTCAATTATCAAAGATTGGATACGAAATACTGATGGAAAGCTTAATTTACTTGGATATACAAAATTTTTGCATGGCGTGACTCACCGTAGCTCAAACACTAGACACCGTTGGTCTTGA 1785 0.4812 MGQCYGKTNPTPENDNTTATVAGPSDLPLSPAPSSTAGTGNGFPSVKGTPARSSSAASPWPSPYPHGGGVTPSPARGTPRRFFRRPFPPPSPAKHIRASLAKRLGHAKTPKEGPIPEEERVAEETLDKSFGYSKNFGARFELGKEVGRGHFGHTCYARGKKGDLKDQHVAVKIISKAKMTTAIAIEDVRREVKILKALSGHKHLVKFHDAFEDANNVYIVMELCEGGELLDRILSRGGKYTEEDAKVIILQILSVVAFCHLQGVVHRDLKPENFLFTSRSENADMRLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRAEPNFDDLPWPSASAEAKDFVKRLLNKDYRKRMTAVQALTHPWLRDDSRPIPLDILVYKLVKAYLHATPFKRAALKALSKALTEDELPYLRAQFRLLEPNRDGHISLENFKMALVRHATDAMSESRVFDIIHAMEPLAYRKMDFEEFCAAAISIYQLEALDRWEDIASTAFEHFEREGNRLISVEELARELNLGPTAYSIIKDWIRNTDGKLNLLGYTKFLHGVTHRSSNTRHRWS 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi880g00017 594 Gene3D - 410 585 - -
Sebi880g00017 594 ProSiteProfiles Protein kinase domain profile. 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi880g00017 594 FunFam CDPK-related kinase 3 132 304 - -
Sebi880g00017 594 Gene3D Transferase(Phosphotransferase) domain 1 229 409 - -
Sebi880g00017 594 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Sebi880g00017 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Sebi880g00017 594 FunFam CDPK-related kinase 1 133 228 - -
Sebi880g00017 594 SUPERFAMILY EF-hand 428 581 IPR011992 -
Sebi880g00017 594 MobiDBLite consensus disorder prediction 1 94 - -
Sebi880g00017 594 FunFam Calcium-dependent protein kinase SK5 312 411 - -
Sebi880g00017 594 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Sebi880g00017 594 FunFam CDPK-related kinase 1 438 510 - -
Sebi880g00017 594 PANTHER SERINE/THREONINE-PROTEIN KINASE 124 567 - -
Sebi880g00017 594 CDD STKc_CAMK 139 401 - -
Sebi880g00017 594 ProSitePatterns Protein kinases ATP-binding region signature. 146 172 IPR017441 GO:0005524
Sebi880g00017 594 SMART serkin_6 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi880g00017 594 Pfam Protein kinase domain 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi880g00017 594 SUPERFAMILY Protein kinase-like (PK-like) 139 423 IPR011009 -
Sebi880g00017 594 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi880g00017 Sebi-Chr880 267106 276355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi880g00017 1 586 EF-hand Containing Proteins AT3G50530 59.558 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi880g00017 Pkinase 3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi880g00017 K13412 - gmx:100796256 1005.36