Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi880g00005 ATGGTTGTGGATGTGTTCACTTCTGGTCCTACCACAACTGCCATTTCTCAAATTATAGATACCATTGGTGAGTTCCTATATTATGCCAGTGATGTCCTTGTGAAGAAGGAGAGTTTTAAGGAACTTGCAGCTTACCATGGAAAGAATTGTGCCCATCTTAAAGAATTGAGGAAAGAAAAAGTCAGTGATTCTGAGACATTCAACCGTGCCATTGAGGTTATGAACGGTGAAATTAAAAATGCAAAAGCTACTGGCTCAAGAATGCAGCAAGAAGAGCAAGGAATAATTGAAGAAATTGAAAAGCTATGTGACAATATGCAGGAAGCTGGGTTTAAGGCAGCTGTTGCAGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATAAGGGAAAACAATGTTAATCGTTCCTATGCCAATAACTTACTGATTCTCATTGCAGAGGCTGTTGGGATTACAAATGAGAGGTCAGCAGTGAAGATGGAACTTGAAGAATTTAAGAAAGAAATTGAGAATGCCCGTATTAAGAAGGAATTGGCTGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGCAGCCTCATCACCTAGGGAAAGGGAACTCAAATACTTTGCCAAACGCCAATCTTTGGGTAATCAAATCTTGGAGCCTTTACAGTCATTTTATTGCCCCATCACCAAGGAGGTTATGGTGGACCCTGTAGAAACATCATCAGGGCAGACATTTGAAAGAAGTGCAATAGAGAAGTGGTTTGCTGAAGGAAATACTTTGTGTCCTCTGACCATGATTTCTTTAGATACCTCAATTTTGAGACCTAATAAAACTTTGAAACAATCTATAGAAGAATGGAAGGATAGAAATACAATGATTACAATTGCCACAGTAAAAGAAAAAATCCAGTCGGGAGAACGATGGTGA 930 0.3914 MVVDVFTSGPTTTAISQIIDTIGEFLYYASDVLVKKESFKELAAYHGKNCAHLKELRKEKVSDSETFNRAIEVMNGEIKNAKATGSRMQQEEQGIIEEIEKLCDNMQEAGFKAAVAEEEILEKIESGIRENNVNRSYANNLLILIAEAVGITNERSAVKMELEEFKKEIENARIKKELAEAMQMDQIIALLERADAASSPRERELKYFAKRQSLGNQILEPLQSFYCPITKEVMVDPVETSSGQTFERSAIEKWFAEGNTLCPLTMISLDTSILRPNKTLKQSIEEWKDRNTMITIATVKEKIQSGERW 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi880g00005 309 SMART Ubox_2 224 287 IPR003613 GO:0004842|GO:0016567
Sebi880g00005 309 Pfam U-box domain 225 291 IPR003613 GO:0004842|GO:0016567
Sebi880g00005 309 SUPERFAMILY RING/U-box 212 293 - -
Sebi880g00005 309 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 307 - -
Sebi880g00005 309 CDD RING-Ubox_PUB 225 274 IPR045210 -
Sebi880g00005 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 303 IPR013083 -
Sebi880g00005 309 ProSiteProfiles U-box domain profile. 220 294 IPR003613 GO:0004842|GO:0016567
Sebi880g00005 309 Coils Coil 155 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi880g00005 Sebi-Chr880 16754 17797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi880g00005 215 287 U-box Gene Family AT1G49780 46.250 4.38e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi880g00005 - - psat:127076110 455.677