Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi880g00001 ATGAAAGTTCCAATGGAGGAAAAGCCATTCCCTGCATGGTCATGGTCTGTGGAGCAGTGTTTGAAAGAGTATGGTGTGAGATTGGACAAGGGTTTGAGTACTTATGAGATACTTTTAGTTGCAGCCTTCATATCATTTCTTTTGGCTTATTTTCATGGAAGTGAATCAGGGGAGTCTGGATTTGAAGCTTATGTGGAGCCACTTGTGATTATTTTGATTTTAGTCCTTAATGCCATTGTTGGAGTTTGGCAAGAGAATAATGCTGAGAAGGCTCTTGAAGCTCTTAAAGAGTTGCAATGTGAATCTGGAAAAGTGTTAAGGGATGGCATTTTTGTGCCTGATTTGCCTGCAAGAGAGCTTGTTCCTGGTGATATTGTGGAGTTGCATGTTGGTGATAAAGTCCCTGCTGATATGAGAGTTGCAGCTTTGAAGACCTCAACATTGAGAATTGAACAAAGCTCATTAACAGGAGAAGCAATGCCTGTTCTCAAAGGGATCAATCCTATTTTCTTGGATGACTGTGAGTTGCAGGCCAAAGAAAATATGGTATTTGCAGGCACCACTGTTGTCAATGGGAGCTGTCTTTGTATTGTTATCACCACAGGAATGAACACTGAAATTGGAAAGATACAGAAACAAATACATGAGGCTTCTTTGGAAGACAGTGACACTCCCTTGAAGAAGAAGTTGGATGAGTTTGAAGGTCTTCCTGCTGTTATCACAACTTGTTTAGCACTTGGCACAAGGAAAATGGCTCAAAAGAATGCAATTGTGAGAAAGCTTCCAAGTGTGGAAACTTTGGGATGTACTACTGTGATATGTTCAGATAAAACTGGTACTCTTACAACAAATCAAATGTCTGTGACAGAGTTCTTTACTTTGGGAGGGAAAACCACTGCTTATCGAGTCATTAGTGTTGAAGGCACAACTTATGATCCCAAGGATGGGGGAATTGTTGATTGGACTTGCTATAACATGGATGCCAACTTGGTAGCCATGGCAGAAATATGTGCTGTTTGTAATGATGCTGGGATGGGAGTTCCAGATGTGAAGTCAAGGAATAAAATTCGTGATGCACAAGTTGCTGCCAACAACATGATGGATTGTAACACTGTGAAGTTAGGCTGTTGTGAGTGGTGGAATAAAAGATCCAAGAGGGTGGCTACATTGGAGTTTGATCGCATTAGGAAGTCAATGAGTGTTATTGTTCGTGAACCAGATGGGGAAAATCGGCTTCTTGTCAAGGGTGCTGTTGAGAGCCTACTGGAGCGTAGTTCACATGTGCAACTTGCTGATGGATCCCTGGTTCCAATAGATGATCAATGTAGAGAACTACTTCTTCAAAGACTGCAGGAGATGAGTTCAAAGGGATTACGTTGCTTGGGTTTGGCATACAAAGATGACTTGGGAGAATTTTCAGACTACTATGCAGACACTCATCCTGCCCACAAGAAATTGCTTGATCCAACATGCTACTCATCCATTGAAAGGGAAATCAAATTGTTCTCTAGAGATGAGGACCTTACAGGGAAAAGTCTGACAGCTGTTGCTGAGGGCCGTTCTATTTATAATAACATGAAAGCATTTATCAGGTACATGATATCATCAAATGTTGGGGAAGTAATATCCATATTCTTGACTGCTGCACTGGGGATCCCAGAATGCATGATACCCAGTACAACTTCTGTGGGTGAATTTGGTTACTGA 1707 0.4153 MKVPMEEKPFPAWSWSVEQCLKEYGVRLDKGLSTYEILLVAAFISFLLAYFHGSESGESGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESGKVLRDGIFVPDLPARELVPGDIVELHVGDKVPADMRVAALKTSTLRIEQSSLTGEAMPVLKGINPIFLDDCELQAKENMVFAGTTVVNGSCLCIVITTGMNTEIGKIQKQIHEASLEDSDTPLKKKLDEFEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGGKTTAYRVISVEGTTYDPKDGGIVDWTCYNMDANLVAMAEICAVCNDAGMGVPDVKSRNKIRDAQVAANNMMDCNTVKLGCCEWWNKRSKRVATLEFDRIRKSMSVIVREPDGENRLLVKGAVESLLERSSHVQLADGSLVPIDDQCRELLLQRLQEMSSKGLRCLGLAYKDDLGEFSDYYADTHPAHKKLLDPTCYSSIEREIKLFSRDEDLTGKSLTAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPSTTSVGEFGY 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi880g00001 568 Gene3D - 284 478 IPR023299 GO:0000166
Sebi880g00001 568 Gene3D - 89 217 - -
Sebi880g00001 568 Pfam Cation transport ATPase (P-type) 370 428 - -
Sebi880g00001 568 FunFam Calcium-transporting ATPase, putative 80 215 - -
Sebi880g00001 568 SUPERFAMILY Calcium ATPase, transduction domain A 105 213 IPR008250 -
Sebi880g00001 568 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 558 IPR023298 -
Sebi880g00001 568 Gene3D - 234 270 - -
Sebi880g00001 568 Gene3D - 515 559 - -
Sebi880g00001 568 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 281 478 IPR023299 GO:0000166
Sebi880g00001 568 Gene3D - 36 233 - -
Sebi880g00001 568 PRINTS Sodium/potassium-transporting ATPase signature 412 430 - -
Sebi880g00001 568 PRINTS Sodium/potassium-transporting ATPase signature 267 288 - -
Sebi880g00001 568 Pfam E1-E2 ATPase 99 244 - -
Sebi880g00001 568 ProSitePatterns E1-E2 ATPases phosphorylation site. 276 282 IPR018303 -
Sebi880g00001 568 Gene3D - 271 283 IPR023214 -
Sebi880g00001 568 PANTHER CALCIUM-TRANSPORTING ATPASE 514 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi880g00001 Sebi-Chr880 4440 8303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi880g00001 513 558 Primary Pumps ATPases(2) AT4G00900 95.652 1.47e-20 94.4