Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi87g00042 ATGGAAGAGGACGATAGTTACAGAAGGAAGTCGAAGATTTTACTCGTTTCCGTCTTGCTGGTTGCTTCCCTCGCCGTATTTGCTTCGCTGGTTGCTTTCGCTTACTACTGCCACATCCGCAACAAGGTCTCCAGGCGCCGCAAAAGCCAGAAAGTTGAAGACGCTAGCTTTAACGAGAAAAGTGACTTTGCAAACCTGCAAGTTGTTGCTGAGAAAGGACTTCGGGTGTTCACTTTCAAGCAGCTGCATTCTGCTACAGGGGGCTTCAGCAAGTCAAATGTGATTGGTCATGGTGGATTTGGACTTGTTTACCGGGGAGTGCTCAATGATGGCAGGAAAGTTGCAATTAAATTCATGGATCAGGCAGGAAAGCAAGGAGAAGAAGAGTTTAAAGTAGAGGTGGAATTGCTAAGTCGGTTGCATTCTCCGTATTTGCTGGCATTGCTTGGGTACTGCTCTGATAGTAACCATAAATTGCTGGTGTATGAGTTTATGGCGAATGGTGGCCTGCAGGAACATCTTTATCCCATCAGCAATTCTAATGTTATGCCCATGAAGTTGGATTGGGAAACTCGATTAAGAATAGCACTTGAAGCTGCTAAGGGTTTGGAATATCTTCATGAACATGTCAGTCCCCCAGTGATTCACAGAGATTTTAAGAGCAGCAACATCCTCTTGGATAAAAAATTTCATGCCAAAGTGTCTGATTTTGGATTGGCTAAACTTGGACCTGATAGAGCTGGTGGACATGTTTCAACTCGTGTTTTAGGCACCCAGGGATATGTTGCCCCAGAATATGCACTAACAGGGCATTTAACAACAAAATCAGATGTGTACAGTTATGGTGTTGTACTCTTGGAGCTACTCACTGGCCGAGTTCCAGTTGATATGAAGAGACCTCCAGGGGAAGGCGTTCTTGTTTCTTGGGCTTTGCCACTGTTGACTGATAGAGATAAGGTTGTAAACATAATGGATCCTGCACTGGAGGGACAATATTCTATGAAAGAGGTTATCCAGGTAGCGGCAATTGCTGCAATGTGTGTGCAACCAGAGGCTGATTATCGACCTCTCATGGCTGATGTTGTGCAGTCATTGGTTCCACTGGTGAGGACTCACAGGTCCACCTCAAAGGTTGGCAGCTGCTCTAGTTTCAATTCCCCTATGTTGTCCCCAGCCCAACATCTAGTTAATGCAAATATGTAA 1203 0.4514 MEEDDSYRRKSKILLVSVLLVASLAVFASLVAFAYYCHIRNKVSRRRKSQKVEDASFNEKSDFANLQVVAEKGLRVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLNDGRKVAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPISNSNVMPMKLDWETRLRIALEAAKGLEYLHEHVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDRDKVVNIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLVRTHRSTSKVGSCSSFNSPMLSPAQHLVNANM 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi87g00042 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Sebi87g00042 400 PANTHER OS07G0668900 PROTEIN 55 374 - -
Sebi87g00042 400 ProSitePatterns Protein kinases ATP-binding region signature. 95 117 IPR017441 GO:0005524
Sebi87g00042 400 ProSiteProfiles Protein kinase domain profile. 89 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi87g00042 400 SUPERFAMILY Protein kinase-like (PK-like) 71 365 IPR011009 -
Sebi87g00042 400 Pfam Protein kinase domain 90 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi87g00042 400 CDD STKc_IRAK 95 368 - -
Sebi87g00042 400 Gene3D Transferase(Phosphotransferase) domain 1 165 383 - -
Sebi87g00042 400 Gene3D Phosphorylase Kinase; domain 1 47 164 - -
Sebi87g00042 400 FunFam Serine/threonine-protein kinase PBS1 56 164 - -
Sebi87g00042 400 FunFam Receptor-like serine/threonine-protein kinase ALE2 165 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi87g00042 Sebi-Chr87 1358315 1362318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi87g00042 1 391 Receptor kinase-like Gene Family AT3G58690 77.238 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Sebi87g00042 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi87g00042 - - gmx:100804893 702.205