Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi87g00035 ATGGTTTCTGATTTTTATAAGCGACCCAATGTGGAAAGTCCAGCAAAAGCTGCATTAGATGAAACCTCCCACATGTTTGAGAATCGAGGTGTCCAGATGCTGGGGCAAATAAAGCATGGTTCATGCCGTCCTCGAGCTATATTATTTAAAGTATTAGCTGATACTGTAGGCCTTGAAAGTAGGCTCATGGTGGGCTTGCCAAATGATGGGGCTGTTGAATGTGTAGATTCATACAAGCATATGTCTGTGATAGTTATACTGAATTCTGTGGAAATGCTGGTTGATCTTATGCGATTTCCGGGCCAATTGTTACCAAGATCAACCAAGGCAGTCTTTATGACTCATATTTCTGCAGCAGGAGAGAGTGATTCAGCAGAAAATGATTCTTGTGATTCGCCATTAGAACCAAACAGTCCCTTATTTGGGGTTTCAGAGAGTGCTGAGAAGGAGGAAAACCTCCAATTTCATAGAAAATTTGAAGTGTCCTCAAATGTTTCAGGCCTTTCCTTGAGAAACATGATGTTACGGTCAAACAGCAGTTTGAGTTTGTCTCATAGTGAACCCAACATTGCAACTGTATTTGGTCGGCGTAGTCGGAAAAAGGTCATTGCTGAGCAGAGGACAGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCACGTGGACGGTCCCTACTTAGTGGTGATAGGACATCTTTTAGAGATTTTGCAGATGACCAGGCTACATCAAGATCCAGCTATAGGTCAGATGGTGCATCCTCATCAGAAGCTCGTAGGATACGAAGAAGAAGCATCAGCATTACGCCAGAGATTGGTGATGATATCGTAAGGGCTGTACGGGCCATGAATGAAACACTAAAGCAAAACCGTCTTCTGAGAGAACGAGGAGATGATAATTCATTACCCCATTCTCCAAACAATAGAAGTGCCAATTTCCATCTTGATGGTCATGATGAAAGGTCCACCTTATCTTCTCATCAGCATCACCAAGTGTCTTCCCAAAAGGCAGTGTCATTACCGTCTTCACCGCATGACTATAGGGGTCAAACTTCTGGGACAAGCGGCCCATCCAGATATGGAGTGAATGATGAAATGGAGTCGACTTGGAATAAAGTACTTGAATCTCCAATGTTCAATAATAAACCTCTATTACCATATGAAGAATGGAATGTTGACTTCTCAGAATTAACTGTTGCAACTCGTGTGGGGATTGGCTTCTTTGGAGAAGTCTTCCGTGGCGTATGGAATGGCACAGATGTAGCAATCAAGGTTTTTCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCTATTCTGAGTTTAGCTGTCATTTATATAGTGATGAAATTGTACGCAGTTATCTTATTTCTTGGTGCTTGCACAAAGCCTCCACATCTGTCAATGGTTACAGAATATATGGAGATGGGATCATTGTATTACTTGATACATTTGAGTGGCCAAAAGAAAAAGCTTAGTTGGCGGAGAAGACTAAGGATGTTGCGTGACATATGCAAGGGTTTGATGTGCGTACACCGTATGAAGATTGTTCACCGTGATCTAAAAAGTGCAAATTGTCTAGTGAATAAGCATTGGACCGTGAAAATATGTGATTTTGGGCTTTCAAGAATAATGATAGATTCTCCCATGAGAGATTCTGCTTCCGCTGGAACCCCGGAATGGATGGCTCCTGAACTCATCCGAAATGAACCGTTCACTGAAAAATGTGATATCTTTAGCCTTGGGGTGATAATGTGGGAGCTATGCACCCTGAACAGACCATGGGAAGGCGTACCACCTGAGAGGGTGGTCTATTCCGTTGCTCATGAGGGTTCCAGATTGGAGATTCCTGAAGGCCCGCTAGGCAGGCTGATTTCAGGTCCCTGCGACTTTCCTTTTATCAGATGTTGA 1926 0.4283 MVSDFYKRPNVESPAKAALDETSHMFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESRLMVGLPNDGAVECVDSYKHMSVIVILNSVEMLVDLMRFPGQLLPRSTKAVFMTHISAAGESDSAENDSCDSPLEPNSPLFGVSESAEKEENLQFHRKFEVSSNVSGLSLRNMMLRSNSSLSLSHSEPNIATVFGRRSRKKVIAEQRTASSSPEHPSFRARGRSLLSGDRTSFRDFADDQATSRSSYRSDGASSSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRERGDDNSLPHSPNNRSANFHLDGHDERSTLSSHQHHQVSSQKAVSLPSSPHDYRGQTSGTSGPSRYGVNDEMESTWNKVLESPMFNNKPLLPYEEWNVDFSELTVATRVGIGFFGEVFRGVWNGTDVAIKVFLEQDLTAENMEDFCNEISILSLAVIYIVMKLYAVILFLGACTKPPHLSMVTEYMEMGSLYYLIHLSGQKKKLSWRRRLRMLRDICKGLMCVHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMIDSPMRDSASAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYSVAHEGSRLEIPEGPLGRLISGPCDFPFIRC 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi87g00035 641 MobiDBLite consensus disorder prediction 289 361 - -
Sebi87g00035 641 SMART serkin_6 396 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi87g00035 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Sebi87g00035 641 Gene3D Phosphorylase Kinase; domain 1 389 480 - -
Sebi87g00035 641 MobiDBLite consensus disorder prediction 238 253 - -
Sebi87g00035 641 Pfam Ethylene-responsive protein kinase Le-CTR1 1 103 - -
Sebi87g00035 641 Gene3D Transferase(Phosphotransferase) domain 1 481 636 - -
Sebi87g00035 641 ProSitePatterns Protein kinases ATP-binding region signature. 402 423 IPR017441 GO:0005524
Sebi87g00035 641 ProSiteProfiles Protein kinase domain profile. 396 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi87g00035 641 CDD STKc_MAP3K-like 402 630 - -
Sebi87g00035 641 Pfam Protein tyrosine and serine/threonine kinase 397 623 IPR001245 GO:0004672|GO:0006468
Sebi87g00035 641 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 209 632 - -
Sebi87g00035 641 MobiDBLite consensus disorder prediction 204 224 - -
Sebi87g00035 641 MobiDBLite consensus disorder prediction 236 261 - -
Sebi87g00035 641 MobiDBLite consensus disorder prediction 326 361 - -
Sebi87g00035 641 SUPERFAMILY Protein kinase-like (PK-like) 370 623 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi87g00035 Sebi-Chr87 1028053 1044826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi87g00035 1 631 MAP Kinase Kinase Kinase AT3G58640 69.985 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Sebi87g00035 PK_Tyr_Ser-Thr 4.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi87g00035 - - gmx:100803469 1097.42