Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi87g00004 ATGGAAATGGAGGCTTTTGCCCCACGAAGGATCAGTGATGGTTTTCATGTCAGTTCCGGTGTAATTGGAAGTGGGTATGCTTCATCTTCGTCTCTGGTTTTGGATAGGGAGAAAGGAGAGCTTGTGGAAGCCCCTGTCAAGTTGGAACGCAAGGGTGTGTCCCCTGAGAGAAGTATTGAAGCCTTGAAGAACCATAGTGAGGCAGAACGTAGGAGAAGAGCAAGAATTAATGCACATCTTGATACCCTTCGTAGTGTGATTCCAGGTGCTAAGAAGTTGGACAAAGCATCCTTACTGGCTGAGGTTATTACACATTTGAAAGAGCTGAAAACGAATGCAGCACAAGCTAGTGAAGGCTTAATGATACCAAAGGACAATGATGAGATAAGAGTTGAAGAACAGGAAGGTGGGTTGAATGGTTTCCCCTATTCAATTAGAGCATCCCTATGTTGTGAATATAAACCTGGGCTATTGTCTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCAGAGATTGCAACGTTAGGAGGCAGAATGAAGAATGTCTTTGTGATAATTAGCTGCAAAGATCAGAACTTTGAAGATGCTGAATACCGGCAGTTTCTGGCTGGCTCTGTCCACCAAGCTCTTAGATCTGTACTTGATAGATTTTCTGTTTCACAAGACATCTTAGAAACCAGAAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTCTTGTGA 750 0.4213 MEMEAFAPRRISDGFHVSSGVIGSGYASSSSLVLDREKGELVEAPVKLERKGVSPERSIEALKNHSEAERRRRARINAHLDTLRSVIPGAKKLDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIIRAEIATLGGRMKNVFVIISCKDQNFEDAEYRQFLAGSVHQALRSVLDRFSVSQDILETRKRRRISIFSSSSLGDFL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi87g00004 249 PANTHER TRANSCRIPTION FACTOR BHLH30 26 241 IPR045847 GO:0003700|GO:0006355
Sebi87g00004 249 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Sebi87g00004 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 115 IPR036638 GO:0046983
Sebi87g00004 249 SMART finulus 66 115 IPR011598 GO:0046983
Sebi87g00004 249 SUPERFAMILY ACT-like 148 225 IPR045865 -
Sebi87g00004 249 Gene3D - 56 118 IPR036638 GO:0046983
Sebi87g00004 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi87g00004 Sebi-Chr87 89887 91604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi87g00004 47 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.816 1.35e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi87g00004 HLH 7.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi87g00004 - - gmx:100783322 418.698