Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi879g00013 ATGGACTCCATGATGGACGACGGTGCCGCCGCCGTGGTTCCTCTCAGCCCCGACCAGGGCACATCCACCTCATCAGAGGAGGAGGAAGAAGCAGCACCAGTGGGTGACGATTTGAAAGGCCTGAGGCTGGTGCACCTTTTGATGGCAGGCGCGGAGGCCCTAACGGGTGCTAACAAGAGCCGCGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAATTGGTGTCTCACTCCCACGGCACCAACATGGAAAGACTCGCTGCTTATTTCACCGAGGCGCTCCACGGCCTGCTAGAAGGCGCAGGGGGTGCGCACAATAACAACAAACATTACGTCATCGGTGGTGGTGGGGCCCATGACCATCAAAACGACATCCTCGCAGCTTTCCAACTGCTTCAGGACATGTCTCCCTACGTCAAGTTCGGCCACTTCACCGCCAACCAGGCCATTTTAGAGGCCGTGGCCCACGAACGTCGGGTCCACATCGTCGATTATGACATCATGGAAGGGGTCCAATGGGCCTCCCTTATGCAGGCCCTCGCCTCCAATAACAACGGCCCACACCTTCGCATCACTGCATTGTCCCGAACCGGCACTGCACGGAGGTCAATCGCTACCGTGCAAGAGACCGGGCGGCGGTTAACGGTGTTCGCGGCCTCCATCGGGCAGCCGTTTTCTTTTCATCACTGTAGGTTGGATCCTGACGAAAGGTTTCGGCCCTCCGCGGTTAAGCTGGTTCGAGGAGAGGCCTTGGTGTTCAACTGCATGCTGAATCTGCCTCACCTCAGTTACCGCGCGCCAGATTCGGTTGCGTCGTTTCTGAGTGGAGCCAAGGCGTTGAGGCCGAGGCTGGTGACGCTGGTGGAGGAGGAAGTGGGGTCTGTTCTTGGTGGGTTTGTGGAGCGGTTCATGGATACGCTACATCACTACTCAGCGGTGTTTGACTCGCTGGAGGCTGGGTTTCCGATGCAAAGTCGGGCCAGGGCGTCAGTGGAACGGGTTTTCTTGGGCCCCCGGATAGCGGACTCGGTGGCCCGGATCTACCGGACGGGTGGAGAGGAAGAGAGAAGGTCGTGGGGGGAGTGGTTGGGTGCGGCTGGGTTTAGGGGAGTTTCCATAAGTTCTGCCAATCATTGCCAAGCAAACTTGTTGTTGGGTCTTTTCAATGATGGGTACAGGGTGGAGGCGTTGGGTAGTCATAAGTTGGTATTGCATTGGAAATCAAGGCGTATGCTTTCAGCCTCCCTTTGGAGTTGTTCAGAATCTGATTCCTAA 1275 0.571 MDSMMDDGAAAVVPLSPDQGTSTSSEEEEEAAPVGDDLKGLRLVHLLMAGAEALTGANKSRDLARVILVRLKELVSHSHGTNMERLAAYFTEALHGLLEGAGGAHNNNKHYVIGGGGAHDHQNDILAAFQLLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASNNNGPHLRITALSRTGTARRSIATVQETGRRLTVFAASIGQPFSFHHCRLDPDERFRPSAVKLVRGEALVFNCMLNLPHLSYRAPDSVASFLSGAKALRPRLVTLVEEEVGSVLGGFVERFMDTLHHYSAVFDSLEAGFPMQSRARASVERVFLGPRIADSVARIYRTGGEEERRSWGEWLGAAGFRGVSISSANHCQANLLLGLFNDGYRVEALGSHKLVLHWKSRRMLSASLWSCSESDS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi879g00013 424 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 31 413 IPR005202 -
Sebi879g00013 424 Pfam GRAS domain family 43 417 IPR005202 -
Sebi879g00013 424 ProSiteProfiles GRAS family profile. 34 418 IPR005202 -
Sebi879g00013 424 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi879g00013 Sebi-Chr879 240441 241715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi879g00013 13 423 GRAS Transcription Factor Family AT5G41920 34.606 2.53e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sebi879g00013 GRAS 2.9e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi879g00013 - - tpra:123896871 659.833