Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi877g00006 ATGGATAAGCAAGTGATACTCCTACCTCTCCTCATGTTCCTCTTCACAAATTTCATATCTTGTGCTTCATCTTCCTCATGTCCCATGGATCTCAGCTATGTTGAGACCTTTCCTTGGGACACATCAACCTGCAGAGGTCCAATTGATACACAGCACTGTTGCCAAGCCCTTCTTAGCCTCTTTGGTATAGGGCTTGCTCAACACCTCAAAGAAACTTCTCAGTTTCAACTTTCTGATGAAAACACTTCCACCACTTGTTTATCTGATTTCAAAGTCAAGCTTGCAGCTTTATCAATAAACCCATCTTTGGTCCCTTCTTGTTTCCAAAACTCTACCCAGTTTGTCACTAACCCTTCCAATTGTGCAGGTATTAATAACACACAAGATTGGAAGCAAAAGGTTGGCATCATGAGTCCTTTAGACACATCTTGTCAAGGGGACATGAGTTCTCAAACTCGTTGCAGTATTTGCACTGATGCTGGCCTTAAAGTGACTTCACAGCTGAATAGTATTGACCCAAATGCCACAAAGTGTTTTTATTTCTCAATCTTATATGCTGCAGCTGTTGTTAATCAATTTGGTCCAACAGATGTAGGCACTGCTGGTTGCATATTAGGCATGCCACTGGCTACAAAAGGGTCATCAAACAGAGAACAGGTGTTGAAAATTGTTTTTGGGTTATTGGGTGCTCTTATTGGTGTTCTGCTTGCTTTTGCATTGATAATCATGTACAGGAAGTGGGATAAGAGAAGGAAGGAAGATCTTTATCACAGGAATGTTGAAAACAGTGTCAGGGAAAGTGTTTTGCCTAATGCTGGTGCAAAATGGTTTCATATATCAGAGCTTGAAAAGGCAACAAATAAATTTGCACAGAAGAATGTGATTGGTCAAGGTGGTGATGGGATTGTGTACAAAGGGACTCTTTCAGATGGAACTGTGGTGGCAGTTAAGGAAATGCTTGATTTGGAAACTAAAGGGGATGAAGAGTTCTGCTATGAGGTGGAGATTATAAGCAAAATAAAGCACAGGAATCTTGTTGCTCTTAGGGGTTGTTGTGTTTCAAGTGATAATTTGAAAGGTAAGAGGAGGTTTTTAGTTTATGATTTTATGCCTAATGGTAGCCTTAGTTACCAATTGTCTCTTACTGGGGCTAATAGGCTAACTTGGCCACAGAGAAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACTAACATACTTTTGGATTCCAAAATGAAAGCTAAAGTAGCAGATTTTGGTTTGGCAAAGCAAGGTAATGAAGGGCAGTCTCATCTCACAACAAGGGTTGCTGGCACATATGGTTATTTGGCACCAGAGTATGCTCTATATGGGCAACTAACAGAGAAAAGTGATGTCTATAGTTTTGGTATTGTGATTCTTGAGATCATGAGTGGAAGAAAAGTGCTTGATACTATGAATTCATCTGTTGTTCTAATCACAGATTGGGCATGGACACTAGCAAAATCAGGAAATGTGGATGAAATTCTTGATCAGTCAATAAGGAAAGAAGGGCCAGAAAAAATCATGGAAAGGTTTGTTCTTGTTGGGATTCTTTGTGCTCATGCATTGGTGGCTTTAAGGCCTACTATTGCTGAGGCACTCAAGATGTTAGAGGGTGACATTGACATTCCCAATTTACCAGACAGGCCAGTACCATTGGGTCATGAGTCCTTTCAATCTTCTCTTTTGTATGGTTTGCAAAGAAGTGGAAGATCAACGCCATATTTTCCATCTTATTCAACAAGTATGAGCACAATATAG 1836 0.4009 MDKQVILLPLLMFLFTNFISCASSSSCPMDLSYVETFPWDTSTCRGPIDTQHCCQALLSLFGIGLAQHLKETSQFQLSDENTSTTCLSDFKVKLAALSINPSLVPSCFQNSTQFVTNPSNCAGINNTQDWKQKVGIMSPLDTSCQGDMSSQTRCSICTDAGLKVTSQLNSIDPNATKCFYFSILYAAAVVNQFGPTDVGTAGCILGMPLATKGSSNREQVLKIVFGLLGALIGVLLAFALIIMYRKWDKRRKEDLYHRNVENSVRESVLPNAGAKWFHISELEKATNKFAQKNVIGQGGDGIVYKGTLSDGTVVAVKEMLDLETKGDEEFCYEVEIISKIKHRNLVALRGCCVSSDNLKGKRRFLVYDFMPNGSLSYQLSLTGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVADFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTMNSSVVLITDWAWTLAKSGNVDEILDQSIRKEGPEKIMERFVLVGILCAHALVALRPTIAEALKMLEGDIDIPNLPDRPVPLGHESFQSSLLYGLQRSGRSTPYFPSYSTSMSTI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi877g00006 611 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 67 580 - -
Sebi877g00006 611 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Sebi877g00006 611 Pfam SPARK 23 178 IPR043891 -
Sebi877g00006 611 Gene3D Phosphorylase Kinase; domain 1 250 369 - -
Sebi877g00006 611 CDD STKc_IRAK 295 564 - -
Sebi877g00006 611 Pfam Protein kinase domain 290 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi877g00006 611 Gene3D Transferase(Phosphotransferase) domain 1 370 568 - -
Sebi877g00006 611 ProSiteProfiles Protein kinase domain profile. 289 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi877g00006 611 FunFam Receptor-like serine/threonine-protein kinase At4g25390 254 369 - -
Sebi877g00006 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Sebi877g00006 611 SMART serkin_6 289 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi877g00006 611 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 370 570 - -
Sebi877g00006 611 SUPERFAMILY Protein kinase-like (PK-like) 274 580 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi877g00006 Sebi-Chr877 79811 81646 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi877g00006 16 592 Receptor kinase-like Gene Family AT1G11050 51.570 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Sebi877g00006 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi877g00006 - - mtr:25482441 1002.66