Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi877g00003 ATGGCTATTATAAGGGTTCAATGGTTCCCAAAACAAGTGTTTGGATCTATCACGGATCCAAAAATGGATAAGCAATTGATTCTCCTCTCCCTCCTCATGTCCCTCTTCACCAATTCCATATCTAATGCTGCATCTTCCTCATGTCCCATGGATCTCAGCTACGTTGAGACCTTTCCTTGGGAAACATCAACCTGCAGAGATCCAATTGATACACAGCAATGTTGCCAAGCCCTTCTCAGCCTATTTGGCATAGGGCTTGCCCAGCACCTCAAAGAAACTTCTCTGTTTCAACTTCCTGATAAAAACACTTCCTCCACTTGCTTATCTGATTTCAAAGTCAAGCTTGCAGCTTTATCAATCCAACCTTCTTTGGTCCATTCTTGCTTCCCTAACTCTGCCCAATTTGTTACTAACTCTTCCAATTGTGCAGGAATAAAAACTGTTCAAGATTGGAAACAAAAGGTTGGCATAATGAACCCATTAGACAGGTATTGTGATGGGGACCTGAAAGATCAAACTAATTGCAATATTTGCACTGATGCTGGTTTTAGAGTGACTTCCCAGCTGAATAGTATTGACCCAAATGCCACAAAATGTTTTTACTTCACCATCTTATATGCTGCAGCTGTTGTTAATCCATTTGGTACAACAGATGTAAGTGCAACTAGTTGCATACTAGGCCTGCAATTGTCTAGTGCAGCAGCATCAAAAGGGTCATCAAATAGAGAACAAGGTTTGACTCTGAAGCTAGTTTTTGCCTTATTGGGTGCTGTAATTGGTGTTCTGCTTGCTTTTGTACTCGTAATCATGTACAGGAAGTGGGATAAGAGAAGGAAGGAAGATCTTTATCACAGGAATATTGAAAACAATGTCAAGGATAGTGTTTTGCCTAATGCTGGTGCAAAATGGTTTCATATATCAGAGCTTGAAAAGGCAACAAATAAATTTTCAGAAAGGAATGTGATTGGTCAAGGTGGTGATGGGATTGTGTACAAAGGGACTCTTTCAGATGGCACTATGGTGGCAGTTAAGGAAATATTCAATTTGGAAACTAAAGGGGATGAAGAGTTCTGCTATGAAGTGGAGATCATTAGCAAAATAAAGCACAGGAATCTTGTTTCTATTAGGGGTTGTTGTGTTTCAAGTGATAATTTAAAAGGTAAGAGGAGGTTTCTAGTTTATGATTTTATACCTAATGGGAACCTCAGTTACCAATTATCTCTTGTTGGGGCTAATAGGCTAACTTGGCCACAGAGAAAAAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACTAACATACTTTTGGATTCCAAAATGAGTGCTAAATTGGCAGATTTTGGGTTGGCAAAGCAAGGTAATGAAGGGCAGTCTCATCTCACAACAAGGGTTGCTGGCACATATGGTTATGTGGCACCAGAGTATGCTCTATATGGGCAACTAACAGAGAAAAGTGATGTCTATAGTTTTGGTATTGTGATTCTTGAGATCATGAGTGGAAGAAAAGTGTTTGATACTTTGAATTCATCAGTGGTTTCAATCACAGATTGGGCATGGACACTTGCAGAATCGGGGAAGATGAAGGAAATTGTTGATCAGTCAATAAGAGAAGAAGGGCCAGAAAAAATCATGGAAAGGTTTGTTTTTGTTGGAATGCTTTGTGCTCATACAATGGTGGTATTAAGGCCTACTATAGCAGAGGCACTCAAGATGTTAGAGGGTGACATTGATATTCCTATTTTACCAGACAGGCCAGTACCACTGAGTCATGTATCGTTTCAATCTTCTCTGCTGAATAGTTTGTAA 1857 0.3974 MAIIRVQWFPKQVFGSITDPKMDKQLILLSLLMSLFTNSISNAASSSCPMDLSYVETFPWETSTCRDPIDTQQCCQALLSLFGIGLAQHLKETSLFQLPDKNTSSTCLSDFKVKLAALSIQPSLVHSCFPNSAQFVTNSSNCAGIKTVQDWKQKVGIMNPLDRYCDGDLKDQTNCNICTDAGFRVTSQLNSIDPNATKCFYFTILYAAAVVNPFGTTDVSATSCILGLQLSSAAASKGSSNREQGLTLKLVFALLGAVIGVLLAFVLVIMYRKWDKRRKEDLYHRNIENNVKDSVLPNAGAKWFHISELEKATNKFSERNVIGQGGDGIVYKGTLSDGTMVAVKEIFNLETKGDEEFCYEVEIISKIKHRNLVSIRGCCVSSDNLKGKRRFLVYDFIPNGNLSYQLSLVGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMSAKLADFGLAKQGNEGQSHLTTRVAGTYGYVAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVFDTLNSSVVSITDWAWTLAESGKMKEIVDQSIREEGPEKIMERFVFVGMLCAHTMVVLRPTIAEALKMLEGDIDIPILPDRPVPLSHVSFQSSLLNSL 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi877g00003 618 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 87 605 - -
Sebi877g00003 618 Gene3D Phosphorylase Kinase; domain 1 277 396 - -
Sebi877g00003 618 SMART serkin_6 316 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi877g00003 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Sebi877g00003 618 SUPERFAMILY Protein kinase-like (PK-like) 301 608 IPR011009 -
Sebi877g00003 618 Pfam SPARK 43 199 IPR043891 -
Sebi877g00003 618 Pfam Protein kinase domain 317 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi877g00003 618 FunFam Receptor-like serine/threonine-protein kinase At4g25390 281 396 - -
Sebi877g00003 618 CDD STKc_IRAK 322 591 - -
Sebi877g00003 618 ProSiteProfiles Protein kinase domain profile. 316 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi877g00003 618 Gene3D Transferase(Phosphotransferase) domain 1 397 594 - -
Sebi877g00003 618 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 397 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi877g00003 Sebi-Chr877 33079 34935 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi877g00003 37 611 Receptor kinase-like Gene Family AT1G11050 51.261 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Sebi877g00003 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi877g00003 - - gmx:100820563 934.48