Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi876g00023 ATGGAAGCATATGGCGGCTACTTGGTGGATGAGAAAGCCGTTAGGGTTGAGAACGCCTTCTTAGGATTTCTCAAAAGCTTCAGATCTGAGAATCGGAACGATCTCCATTACGAAGCGGAGATAGAAATGATGAAAGCCAACGAATCCAACACCATGTTCATCGATTTCGACCACGTCATAACATTCAGTGATCTCCTCCACAAAGCTATCTCTGATGAATATTTGAGGTTTGAACCTTATCTGAAGAACGCCTGTAAGAGGTTTGTTATGGAGCTCAAGCCAACCTTCATATCTGATGATAACCCTAACAGGGACATCAACGTTGCCTTCTACAATATTCCAATCGTCAAGAGGCTGAGGGAATTGGCTACATCAGAAATTGGAAGGCTTGTATCCGTGACAGGAGTGGTAACGAGGACAAGTGAGGTTCGACCTGAGCTTCTCCAAGGGACTTTCAAGTGCCTAGAATGTGGTGGGGTTATAAAGAATGTTGAACAACAATTCAAGTATACTGAGCCAACAATATGTGTGAATGCGACCTGTAACAACCGAGCAAAGTGGGCACTACTGCGGCAAGAGAGCAAATTTGCTGACTGGCAAAGGGTTAGGATGCAGGAGACATCCAAAGAGATACCTGCAGGCTCTCTGCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTAGAACAGGCCAGGGCTGGTGACACGGTGATTTTCACGGGTACTGTAGTTGTTATACCTGACATATTGGCATTGGCATCCCCTGGAGAGAGATCAGAATGCCGTCGGGAAGCTTCACGCAAGGGTGCTACTGCTGGAAATGAGATTTGTGATGGTAGAAGAGAAACAGACATCAGGAATAGAAAGAAGGATGCAGATGAAGATGATCAGCAATTTACTGCACAGGAGCTGGATGAAATTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAACTTGTTGAGAGCATTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGCGAGCAATCCTTCTTATGCTTATGGGTGGTGTCCACAAATTAACTCATGAAGGCATCAACCTAAGAGGAGATATAAATGTTTGTGTTGTGGGAGATCCCAGCTGTGCAAAGTCTCAATTTTTGAAGTATACTTCAGGCATAGTTCCAAGGTCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGCTTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCCGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGACATCAAAGTCAGGTTGCAATTCATGAGGCCATGGAAACAGCAGACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTAATGCTCCTATACTTTCCAAGGTTTGATCTTGTATATGTTATGATTGATGACCCAGATGATCAGACAGATTACCACATAGCTCATCATATCGTGAGAGTTCATCAAAAGCGTGAAGATGCTCTTGCTCCTGCATTCACTACAGCAGAACTAAAGCTGTGGGAGTCCAGTGAGATTGATCTGTCTGAGTTTCAAGAAGCAAACCGGGATGATGGCACAGGTAGTGGTGATGGAAATGATAATAATAGAGACGCTGGTCAAGATGGAAACTCTGCAGCTCCGCAAGCTGCTGGAACTGATGGTGAG 1695 0.4425 MEAYGGYLVDEKAVRVENAFLGFLKSFRSENRNDLHYEAEIEMMKANESNTMFIDFDHVITFSDLLHKAISDEYLRFEPYLKNACKRFVMELKPTFISDDNPNRDINVAFYNIPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICVNATCNNRAKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDILALASPGERSECRREASRKGATAGNEICDGRRETDIRNRKKDADEDDQQFTAQELDEIQRMRNTPDFFTKLVESIAPTVFGHPDIKRAILLMLMGGVHKLTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKVRLQFMRPWKQQTISITKAGIQATLMLLYFPRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREDALAPAFTTAELKLWESSEIDLSEFQEANRDDGTGSGDGNDNNRDAGQDGNSAAPQAAGTDGE 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi876g00023 565 MobiDBLite consensus disorder prediction 263 297 - -
Sebi876g00023 565 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 74 86 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Sebi876g00023 565 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 116 128 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Sebi876g00023 565 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 219 230 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Sebi876g00023 565 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 166 183 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Sebi876g00023 565 Gene3D - 146 197 - -
Sebi876g00023 565 SUPERFAMILY Nucleic acid-binding proteins 20 249 IPR012340 -
Sebi876g00023 565 ProSitePatterns MCM family signature. 426 434 IPR018525 GO:0003677|GO:0005524|GO:0006260
Sebi876g00023 565 FunFam DNA helicase 146 197 - -
Sebi876g00023 565 MobiDBLite consensus disorder prediction 531 557 - -
Sebi876g00023 565 SMART mcm 115 562 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sebi876g00023 565 Pfam MCM N-terminal domain 18 112 IPR027925 -
Sebi876g00023 565 ProSiteProfiles MCM family domain profile. 317 464 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi876g00023 565 Gene3D - 8 115 - -
Sebi876g00023 565 MobiDBLite consensus disorder prediction 525 565 - -
Sebi876g00023 565 Pfam MCM OB domain 119 247 IPR033762 -
Sebi876g00023 565 Gene3D - 119 247 IPR012340 -
Sebi876g00023 565 Gene3D - 298 466 IPR027417 -
Sebi876g00023 565 PRINTS Mini-chromosome maintenance (MCM) protein family signature 446 459 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi876g00023 565 PRINTS Mini-chromosome maintenance (MCM) protein family signature 358 373 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi876g00023 565 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 432 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi876g00023 565 Pfam MCM P-loop domain 305 464 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi876g00023 565 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 11 464 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sebi876g00023 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 505 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi876g00023 Sebi-Chr876 304321 310831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi876g00023 1 517 Core DNA Replication Machinery Family AT5G44635 71.777 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi876g00023 K02542 - gmx:100787290 882.478