Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi876g00012 ATGAGATTTTTAACACTTGCAATTGTTCTCCTCTTGTGCTATTCTTGTGGGATATTAGTCTTTTGCCATGGAAGCTTAGATAGTCATGAGAGCACTTTGAGAGTGCTTTTGGAGGTGAAATCATCTTTCTTGGGAGACCCTCAAAATGTTCTGAGTGATTGGTCAGAGAACAATACTGATTACTGCAGCTGGAAAGGAGTGTCATGTGAGTTGAAGAAGTTAAACTCCAAAAATTTGAATGACTCGGTGCGAGTGGTGGTGGGACTCAACCTGGCTGACTCGTCACTCACTGGGTCAATATCACCCTCACTCGGTCGTTTGCAAAACCTGCTCCGTCTTGATCTCTCTTCTAACTACCTCACCGGTCCCATTCCACCTAGCATCTCCAACCTCATTTCGTTGGAATCTCTGCTACTCTTCTCCAACCAACTCACGGGTCACATTCCCACTGAGTTTGGTTCGCTGCTGAGTCTCCGAGTTTTGCGAATCGGTGACAATGGACTCACTGGTGTGATTCCCGCTTCACTTGGGAATGTGGTTAACCTTGTCAACCTTGGTTTAGCTTCATGCAGTCTCACCGGTTCGATTCCACCCCAACTCGGTCAACTCAGTGAGTTGGAGAATCTCAACCTGCAGGACAATGAATTGAAGGGTCCGATTCCGTCCGAGTTAGGGAACTGCTCAAGCCTTGTCAACTTCACTGCTGCTGATAACAAACTCAGTGACTCGCTCCCGAGTGAACTGGGTCAACTCAGTAAACTCCAAACTCTCAACCTTGCCAACAACAATCTAAAAGGGGAGATTCCGAGTCAACTCGGTGAACTGAGTGAGCTTGTTTATCTGAATTTAAAGGCGAACCAGCTTGAGGGTCATATTCCACCGTCTCTAGCTCAACTGGGTAGTCTTCAAACTCTGGACTTGTCAAAGAACATGCTCAGTGGTGGGATTCCAGAGGAGTTGGGGAACATGGGTCAGTTACATTACATGGTTCTCTCTGAGAATCAACTCTATGGGACTATTCCAAGAACCATATGTTCCAATGCAACAAGTTTGGTGCAGTTGTTGATATTAAACTGTGGACTTCATGGTGAGATTCCAGCTGAGTTGATTCAATGCCAATCATTGAAACAGCTTGATTTGTCCAACAATTATCTTAATGGAACAATACCTCTCGAGGTTTATGGATTGAAGGGGCTAACTGATCTCTCCCTTTACAACAACAGCTTGGTTGGTTCAATCTCTCCCTTCATAGGGAACCTAACTAATTTGCAAACTCTTGGATTGTATCAGAACAAGTTGCAGGGTGCTCTGCCCAGAGAGATTGGGATGCTTGGGAAGCTGGAAAGACTATTTCTTTATGAGAATCAATTATCAGGGAAGATACCTTTGGAGATTGGTAACTGTTCAAGCTTGCAAATGATTGATTTTTTTGGGAATCATTTCAGTGGGGAAATTCCCTTTACTATTGGGAGATTGAAAGAGTTGAGTTTCCTTCACATTAGGCAGAATGAGCTTGTGGGTGAGATTCCTGCTACCCTTGGTAACTGTGGGAAACTGGAGGCGCTGGATTTGGCAGACAATCAGCTCTCAGGTGGGATTCCTGCAACATTTGGATTCCTCACATCATTGCAGCTGTTTATGCTCTACAACAATTCTCTCCAAGGTAGCCTTCCTCACCAACTGATAAATGTAGCAAACTTAACCAGAGTGAATCTTTCAAAGAACAAACTGAATGGTAGTTTGAATGCATTGTGTAGCTCTCGGTTGCTTCTCTCTTTTGATGTCACAGATAATGAATTTGATGGTGAAATCCCCTCTCACTTGGGAAGCTCACCCTCCCTTGAGAGGCTAAGATTAGGTAACAACAAATTTTCTGGTGAAATCCCAAGGACATTGGGAAAAATCACTAATTTGACATTGTTAGACCTCTCAGGAAATTCACTCACAGGACCAATACCATATGAACTTTCATTGTGTAATAAACTGACACACATTGATGTAGAAAATAACCTTTTATCTGGACGCATGCCACAATGGCTTGGAAGTTTGCCCCAACTGGGAGAGCTTAGGCTTTCATCCAATCAATTTTCTGGTCCTCTTCCACTAGGCCTATTCAAATTACCCGAGTTGCTGGTTCTTTCCTTGCATAACAATTCATTTAATGGAAGTCTCCCTGATGATATTGGTGATCTTGAATCCCTTAATGTCCTTAGACTTGAAAATAATAAGTTCTCTGGACCAATCCCTCATGCAATAGGTAAGTTGAGGAATCTTTATGAGCTCCAACTTTCCAGAAATAGCTTTGATGGTGAGATACCAACTGAGATTGGAAGTCTCCAAAATCTCCAAAGCATTTTAGACCTCAGTTGCAATAATCTTTCTGGTCACATCCCACCTTCTCTTGATATGCTGTCAAAATTGGAAAGACTTAATCTTTCTCACAATCAACTCACTGGACAAGTTCTTCTGTCAGTTGGTGAAATGAGGAGCTTGGGAACGTTTGATATCTCTTACAATAAGCTTGAAGGTGCATTGGATAAGCAATTCTCTCGCTGGCCATATGAGGCATTTGAAGGGAACCTAAATCTTTGTGGAGCCTCTCTTGGGCGGTGCAGTGCTCCCCATAACAAGCTTTCAGGCTCAAGTGAGGCATCAGTGATTATAGTCTCTGCCATTTCAACTTTTGCTGCAATAGCACTACTAATACTTACAGTGAGAATCTTCAAGAAAAACAAACAAGCTTTTTTCAGGAAAGGAAGTGAATTGAGTTGTGTTTTCTCCTCTTCTTCATCACAAGCAAGGAGACGAGCATTGTTCCCACTAAATGCTGCTGGAAAGAGAGATTTCAAATGGGAAGATATCATGGATGTGACAAACAATTTGAGTGATGAGTTCATAATTGGTTGTGGAGGTTCTGGGACAGTCTATAGAGTTGAATTGCCCACTGGAGAGACTGTGGCTGTCAAGAAGATTTTATGGAAAGATGATTATCTGTCAAACAAAAGCTTTATGAGAGAAGTTAAGACTCTGGGAAGGATTAGGCACAGACATCTGGTGAAACTGATAGGCTGTTGTAGCAATAGAAACAAAGGAACAGGTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTATGGGATTGGCTTCATGGAAAACCTCTCAAGGAAAGCAAAGCAGAGGGGAGCCTTGATTGGGACACAAGGTTCAAAATTGCTGTGGGATTAGCTCAAGGAGTGGAGTATCTTCATCATGATTGTGTACCAAAGATCATTCACAGGGACATCAAATCCAGCAACATATTGCTAGATTCCAGAATGGAGGCACACTTGGGAGATTTTGGACTAGCAAAAACACTCAGTGAGAATCATGATTCTTACACTGAGTCCAATTCTTGCTTTGCTGGGTCTTATGGTTACATAGCCCCAGTTTAA 3438 0.4261 MRFLTLAIVLLLCYSCGILVFCHGSLDSHESTLRVLLEVKSSFLGDPQNVLSDWSENNTDYCSWKGVSCELKKLNSKNLNDSVRVVVGLNLADSSLTGSISPSLGRLQNLLRLDLSSNYLTGPIPPSISNLISLESLLLFSNQLTGHIPTEFGSLLSLRVLRIGDNGLTGVIPASLGNVVNLVNLGLASCSLTGSIPPQLGQLSELENLNLQDNELKGPIPSELGNCSSLVNFTAADNKLSDSLPSELGQLSKLQTLNLANNNLKGEIPSQLGELSELVYLNLKANQLEGHIPPSLAQLGSLQTLDLSKNMLSGGIPEELGNMGQLHYMVLSENQLYGTIPRTICSNATSLVQLLILNCGLHGEIPAELIQCQSLKQLDLSNNYLNGTIPLEVYGLKGLTDLSLYNNSLVGSISPFIGNLTNLQTLGLYQNKLQGALPREIGMLGKLERLFLYENQLSGKIPLEIGNCSSLQMIDFFGNHFSGEIPFTIGRLKELSFLHIRQNELVGEIPATLGNCGKLEALDLADNQLSGGIPATFGFLTSLQLFMLYNNSLQGSLPHQLINVANLTRVNLSKNKLNGSLNALCSSRLLLSFDVTDNEFDGEIPSHLGSSPSLERLRLGNNKFSGEIPRTLGKITNLTLLDLSGNSLTGPIPYELSLCNKLTHIDVENNLLSGRMPQWLGSLPQLGELRLSSNQFSGPLPLGLFKLPELLVLSLHNNSFNGSLPDDIGDLESLNVLRLENNKFSGPIPHAIGKLRNLYELQLSRNSFDGEIPTEIGSLQNLQSILDLSCNNLSGHIPPSLDMLSKLERLNLSHNQLTGQVLLSVGEMRSLGTFDISYNKLEGALDKQFSRWPYEAFEGNLNLCGASLGRCSAPHNKLSGSSEASVIIVSAISTFAAIALLILTVRIFKKNKQAFFRKGSELSCVFSSSSSQARRRALFPLNAAGKRDFKWEDIMDVTNNLSDEFIIGCGGSGTVYRVELPTGETVAVKKILWKDDYLSNKSFMREVKTLGRIRHRHLVKLIGCCSNRNKGTGWNLLIYEYMENGSVWDWLHGKPLKESKAEGSLDWDTRFKIAVGLAQGVEYLHHDCVPKIIHRDIKSSNILLDSRMEAHLGDFGLAKTLSENHDSYTESNSCFAGSYGYIAPV 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi876g00012 1145 ProSiteProfiles Protein kinase domain profile. 961 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi876g00012 1145 Gene3D Transferase(Phosphotransferase) domain 1 1042 1145 - -
Sebi876g00012 1145 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 295 391 - -
Sebi876g00012 1145 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 922 1041 - -
Sebi876g00012 1145 SUPERFAMILY L domain-like 345 648 - -
Sebi876g00012 1145 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Sebi876g00012 1145 FunFam Os07g0541700 protein 1054 1137 - -
Sebi876g00012 1145 Gene3D Ribonuclease Inhibitor 396 486 IPR032675 -
Sebi876g00012 1145 Gene3D Ribonuclease Inhibitor 487 584 IPR032675 -
Sebi876g00012 1145 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 198 - -
Sebi876g00012 1145 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 486 582 - -
Sebi876g00012 1145 Pfam Protein kinase domain 966 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi876g00012 1145 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 199 294 - -
Sebi876g00012 1145 Gene3D Ribonuclease Inhibitor 585 879 IPR032675 -
Sebi876g00012 1145 SUPERFAMILY L domain-like 57 341 - -
Sebi876g00012 1145 Pfam Leucine rich repeat 756 817 IPR001611 GO:0005515
Sebi876g00012 1145 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 609 1144 - -
Sebi876g00012 1145 Gene3D Phosphorylase Kinase; domain 1 923 1041 - -
Sebi876g00012 1145 Gene3D Ribonuclease Inhibitor 234 395 IPR032675 -
Sebi876g00012 1145 SMART serkin_6 961 1142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi876g00012 1145 Gene3D Ribonuclease Inhibitor 31 153 IPR032675 -
Sebi876g00012 1145 ProSitePatterns Protein kinases ATP-binding region signature. 967 990 IPR017441 GO:0005524
Sebi876g00012 1145 SMART LRR_typ_2 155 178 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 635 659 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 804 824 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 203 227 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 444 468 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 707 731 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 492 516 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 107 131 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 420 443 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 540 564 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 755 779 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 251 275 IPR003591 -
Sebi876g00012 1145 SMART LRR_typ_2 299 323 IPR003591 -
Sebi876g00012 1145 SUPERFAMILY L domain-like 585 845 - -
Sebi876g00012 1145 Pfam Leucine Rich Repeat 518 540 IPR001611 GO:0005515
Sebi876g00012 1145 Pfam Leucine Rich Repeat 109 131 IPR001611 GO:0005515
Sebi876g00012 1145 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 583 875 - -
Sebi876g00012 1145 FunFam Uncharacterized protein 392 485 - -
Sebi876g00012 1145 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1092 1104 IPR008271 GO:0004672|GO:0006468
Sebi876g00012 1145 SUPERFAMILY Protein kinase-like (PK-like) 945 1144 IPR011009 -
Sebi876g00012 1145 PRINTS Leucine-rich repeat signature 375 388 - -
Sebi876g00012 1145 PRINTS Leucine-rich repeat signature 804 817 - -
Sebi876g00012 1145 Gene3D Ribonuclease Inhibitor 154 233 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi876g00012 Sebi-Chr876 165925 169414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi876g00012 170 743 Receptor kinase-like Gene Family AT5G56040 37.105 4.30e-91 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi876g00012 Pkinase 1.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi876g00012 - - gmx:100801889 1618.21