Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi876g00002 ATGGATGCTTCAAGTGGAAGTTCTGGTGATTCTGGTGATAAGCGAGACAGGAATCAAAGTTCTAGTGAGGGAAACCCATCCTTCCATTTCACTCCTCGTCACTTAGCTCAACTTGAAGCATATTTGAAGCTATGCCCACATCCAGATGAAACCCAACTTCATATAATAGCAAGGGACCTAGGGCTTGATCCAGAACAGATTTATCATTGGTTTCAGACCAAAATCCAGGGAGATCATGAGGGGTCTGAATCTGAGCTAGAGTCTCCAAGCACAGAAGTTGCTAGGAAGAAGGAAAGAAGACAAATGTTAGAGATTGCAGATGCTGCTATAAGCGAACTCCTTAAACTCATGACCACCGATAACCCCCTTTGGACCAAATCCTATGATATTGTCGGCTTTGTTCTCGTTCCTGAAAGCTATGCCAACTTGTTTCCTAGGGCTATTAACTTGCCAAGTCCAGACATTATTCATCAAGAATCTTCCAAAGATTCAATAGTAGTAAAGCTTGGTGTGATGCAATTGATTGAAATGTTTTTAGATTCGGAGAATTGGGCTAATCTTTTCCCAACCATTGTCTCAAAAGCAAAAACATTGAGAGTCTTTGATATCGGTTCACTAGAAAATAAAAGTGGAGCCTTGCAATTGATGTATGGAGAAATTCACGTTCTTTCACCTTTAGTGCCATCTCGGGAATTCATCTTCCTTCGCTCTTGTGAACAAGTTGGGGATGGTTTATGGTTGATAACTGATGTGTCTGTTGATAATGCGTCTCTTGATAACAACTATGAAGGCCAAATCCCTGATTCTCCTCTTCGAAAGTTCCCCTCAGGCTGCATGATTAAGCAATTGCCTAATGGATTTTCCAAGGTTACTTGGATTGAACATGTGGAAGTGCAAGAAAAGAGCGAAATAGACAATCGCTACAAAGAGCTTATTTCTAACAATTTCGCTTTTGGAGCAAACAGGTGGCTGTTTGCTCTTTACAAAATGTGTGAGAAAATTGCTTGCACTTCAATTCAGTATCTGCCAGCTCATAGAGAGATCTCTTCACCCAGAGGAAGAGAGGTCGTAATAAACCTCTCTAACCGAATGGTTCAGAACTTCTGCAAAATACTGAACCTAAGAGATCGTCCACATTTTACGAGTTTTCATGTGGGCAGGAATGAACTTTTTTGGGATGTTCTTTCCGTTGGGAATCCACTGGAGGAGATCACATATATCCCAATCAGCGATACCAGTCGTATTTCAGTTATTAAGACTTTCAACCGTGATGACAACGATTTGCTGATATTTCAAGAGAGTAGTATAGATCATTTGGGAGCGTATGTTGTGTTTGCTCCACTGGATGAAGCAAGTGGGGAAATGGTGATGAATGGAGAGTCTACGAATGTGGCAGTGCTTCCGTCAGGGTTTATGATCAGTGGGGACAATAGTGCAGTTGCTGAGAGTAGAAATCCTCATAGATCAGGAGGAACGTTGTTGACTACATGTTACCAAGTACTGGTTTGTCATGACTCACTGACCCTGGAAATGAAAGTTGAAGCTATGAAGTCTCTCATTGGACTCATCATCTCAACAATCCAAAGGATTACCCTTGGTCTCGAGTGTCCCAATTGTTGGTTATGA 1626 0.4157 MDASSGSSGDSGDKRDRNQSSSEGNPSFHFTPRHLAQLEAYLKLCPHPDETQLHIIARDLGLDPEQIYHWFQTKIQGDHEGSESELESPSTEVARKKERRQMLEIADAAISELLKLMTTDNPLWTKSYDIVGFVLVPESYANLFPRAINLPSPDIIHQESSKDSIVVKLGVMQLIEMFLDSENWANLFPTIVSKAKTLRVFDIGSLENKSGALQLMYGEIHVLSPLVPSREFIFLRSCEQVGDGLWLITDVSVDNASLDNNYEGQIPDSPLRKFPSGCMIKQLPNGFSKVTWIEHVEVQEKSEIDNRYKELISNNFAFGANRWLFALYKMCEKIACTSIQYLPAHREISSPRGREVVINLSNRMVQNFCKILNLRDRPHFTSFHVGRNELFWDVLSVGNPLEEITYIPISDTSRISVIKTFNRDDNDLLIFQESSIDHLGAYVVFAPLDEASGEMVMNGESTNVAVLPSGFMISGDNSAVAESRNPHRSGGTLLTTCYQVLVCHDSLTLEMKVEAMKSLIGLIISTIQRITLGLECPNCWL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi876g00002 541 Gene3D - 104 308 IPR023393 -
Sebi876g00002 541 ProSiteProfiles 'Homeobox' domain profile. 21 74 IPR001356 GO:0003677
Sebi876g00002 541 Pfam Homeodomain 30 72 IPR001356 GO:0003677
Sebi876g00002 541 CDD homeodomain 30 72 IPR001356 GO:0003677
Sebi876g00002 541 SUPERFAMILY Bet v1-like 98 334 - -
Sebi876g00002 541 SMART START_1 104 333 IPR002913 GO:0008289
Sebi876g00002 541 CDD START_ArGLABRA2_like 99 332 - -
Sebi876g00002 541 ProSiteProfiles START domain profile. 95 336 IPR002913 GO:0008289
Sebi876g00002 541 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 390 531 IPR042160 -
Sebi876g00002 541 SMART HOX_1 23 85 IPR001356 GO:0003677
Sebi876g00002 541 Pfam START domain 104 333 IPR002913 GO:0008289
Sebi876g00002 541 SUPERFAMILY Homeodomain-like 25 73 IPR009057 -
Sebi876g00002 541 Gene3D - 2 77 - -
Sebi876g00002 541 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi876g00002 Sebi-Chr876 12060 14745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi876g00002 53 536 Homeobox Transcription Factor Family AT4G04890 34.120 2.57e-82 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi876g00002 START 3.1e-28 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi876g00002 K09338 - aprc:113852280 428.328