Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi875g00004 ATGCATGGAAAATGTCACGCTATTGAAACGCGTCGGTTCACTCGTCAAAATGCCAGGCATCTTAATTCCATTGAAGGAGATGAAGGAATTGAAATCACAAAGTTGAATGCATGTAATGAGATGGAGAAAGACTGTAACTGTATTGAGGATATGGAGATTGAAGTTCTCCCTTCAATGTGGCCTGAAGATATTGTAACCGATGTTGGAAAACAGTTCAATATAGAAAAGCCTGGAAGAGATCAAGATATGTTAGAAGAGGTTACAATCATAGAAGAGCCAACAATAGTTGATTTCAAGCGTCTCATGGAGCTGACAAGTTTCACAGAGAAAGGTTCTTCTCAATTAGCATACCTTATGAAACACTGGGAGTATAAACAAGCCAATGTTGTGCGTCTTCTAAGGGAAGAACTCGATAACCTAAGCAAACAGAGAGAGGATGTTGAGTTAAGGAAATTGGAGATATTGGAAGAGCATCGATTTGAGGAAGAAAGATATGGTGGTGATAAACGTCCAGTTTCTATATTGGATGATATTTATGATATATGGCAAGATGTACCATGCAGGAAAAGTGATGTTGTGGTTCAAAACAAGAGGATTGAAATTGAGGAGGAGTATGATACTGTTGTGTATTGGAAACAGCGAGCACTACACTTAGAAAAGTTGTTGGAGGCGAGTATTCAGAGAGAACAGATACTTGAAGAGAAGTTACATGAAAGTATAGAGAATATTGAAAGACAATCCTCACCTGTGGAAGAACTCTCTCAGATCCTTAAGAGAGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGGTATCGCTTTATCTATAACCATTTTCCAAGTTTACAAGAGGAGGACATTATAGGAAAAACGGATGTTGAAATATTCACAGGATCTGGTGTTAGGGAATCTCAAGATTTCAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAGCTATTTGGGTCAAAGACATTTTTAATATATGTAGAGCCTGTCTTCAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAATTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCTAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTATCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCGGGAGCAAAGACAGCTCTTGGATGTTATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAACTACCAAATTTCGTCCAAGAGAGGTAGTAAGGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGACATGTGGCAGATGATGTACCCATCGAGGTCATTGGTGATGTTTTAAGGATTCGGCAAATTCTCACAAATTTAATCAGCAATGGCATCAAGTTTACTCATGAAGGCAAAGTTGGGATAAATCTTTATGTTGTGCAAGAGCCAACTTTTGCAAAAGCAGAAGGCATCCAAAAGATGACTCAAGACCATTCAACTATTTCAGTGAATGGAGTGAAAGAAGAAAAATATCTCTCAACACATCAAAGTGGCAGTGATCGAAATCTTCCTGATGGTCAAAAACATGATGACCATCCCAGGCAAAACCATGTATTTAATGATGAATGTAGATCTCCTGTTAAAAGCGAATGCTCAATGAACGGAGACACTGAGGAGCAACATCATTCAAATGAAACAACAGTGTGGATACGTTGTGATGTATATGATACAGGCATTGGAATACCAGAAAACGCTATACCAACTTTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGTGGCACAGGGTTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTAGTCTCACAGTGTCTAGCAAAGAACATCATGGTTCTACCTTCACGTTCATACTCCCACACAAGGTTTCCATAGCTTGTGATAATTCTGATGATTCAGATGAGCTCTCAGACGTGGAGAATAATGATGCCAGGCCTGATGATACAACAGAGGGTTTCTTCCAATTCCAACCACCCACTTTGGGCTCTTTGTTCTCTAATGGATCTAGTAGGACTCAGAAGTTATTACCACACAAAATTGGCTACACAAGCTCACATAAATTTAATGGGTTTTTAGAGAGTTCATCTTTATTCCCCTTTAATGACATCATATCAAAAGGGACATGTTCAGTTGATGACGCTTCTTCAGTGGTTGATGCTCCAGAGATGTCTGAATCAGCTAGCTCATCTGGTTACAGCTCAGAAACAAAGGACAGATGTTCAGTTAGAAGAGACAAACAACATCTATATAAGGCTCATGCTTGGTCCCAAGATGGTGGTGCAGTTTCTTCTCAACCTACAGTGGCAAATAGGGAAATGGCACTAGCAATGAAGTCAAGTGAACCCCAACAAACATGTCAGGATCGAGGAAAGACAAACACAACTAGCCAGTGTGTTACTAGCAGCAGTATATCAGATGTAACCAAATCCACATTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAAATTAATGTCATGGTGACACAATCCATGATGAAGCAGTTAGGTCATAGCATAGATGTTGTAAATAATGGGGCAGCAGCAGTACGTGCAGTTCAGCGCCATACTTATGATCTGGTTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGGTCTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCTGGAATCGAGCAAAGTTTACCAGATCCAGATTATGAATGTTCTGTACCATCTACAAAGCGTATCCCCATTATTGCGGTGAGCAATTAG 3051 0.3972 MHGKCHAIETRRFTRQNARHLNSIEGDEGIEITKLNACNEMEKDCNCIEDMEIEVLPSMWPEDIVTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTSFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQREDVELRKLEILEEHRFEEERYGGDKRPVSILDDIYDIWQDVPCRKSDVVVQNKRIEIEEEYDTVVYWKQRALHLEKLLEASIQREQILEEKLHESIENIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVRESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLETTKFRPREVVRHVLQTAAASLQKILTLEGHVADDVPIEVIGDVLRIRQILTNLISNGIKFTHEGKVGINLYVVQEPTFAKAEGIQKMTQDHSTISVNGVKEEKYLSTHQSGSDRNLPDGQKHDDHPRQNHVFNDECRSPVKSECSMNGDTEEQHHSNETTVWIRCDVYDTGIGIPENAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGSLTVSSKEHHGSTFTFILPHKVSIACDNSDDSDELSDVENNDARPDDTTEGFFQFQPPTLGSLFSNGSSRTQKLLPHKIGYTSSHKFNGFLESSSLFPFNDIISKGTCSVDDASSVVDAPEMSESASSSGYSSETKDRCSVRRDKQHLYKAHAWSQDGGAVSSQPTVANREMALAMKSSEPQQTCQDRGKTNTTSQCVTSSSISDVTKSTLKPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGAAAVRAVQRHTYDLVLMDVCMPVMNGLQATKLIRSFEETGNWDAARNAGIEQSLPDPDYECSVPSTKRIPIIAVSN 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi875g00004 1016 Pfam Response regulator receiver domain 910 977 IPR001789 GO:0000160
Sebi875g00004 1016 CDD HATPase_EvgS-ArcB-TorS-like 525 714 - -
Sebi875g00004 1016 Coils Coil 226 246 - -
Sebi875g00004 1016 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 463 715 IPR036890 -
Sebi875g00004 1016 MobiDBLite consensus disorder prediction 871 891 - -
Sebi875g00004 1016 MobiDBLite consensus disorder prediction 583 634 - -
Sebi875g00004 1016 ProSiteProfiles Response regulatory domain profile. 909 1016 IPR001789 GO:0000160
Sebi875g00004 1016 ProSiteProfiles Histidine kinase domain profile. 416 717 IPR005467 -
Sebi875g00004 1016 MobiDBLite consensus disorder prediction 724 753 - -
Sebi875g00004 1016 FunFam Probable histidine kinase 1 608 720 - -
Sebi875g00004 1016 SUPERFAMILY CheY-like 908 975 IPR011006 -
Sebi875g00004 1016 CDD HisKA 408 470 IPR003661 GO:0000155|GO:0007165
Sebi875g00004 1016 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 53 992 - -
Sebi875g00004 1016 MobiDBLite consensus disorder prediction 594 616 - -
Sebi875g00004 1016 FunFam Histidine kinase 5 251 386 - -
Sebi875g00004 1016 Gene3D - 902 1016 - -
Sebi875g00004 1016 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 408 474 IPR036097 GO:0000155|GO:0007165
Sebi875g00004 1016 Pfam His Kinase A (phospho-acceptor) domain 411 474 IPR003661 GO:0000155|GO:0007165
Sebi875g00004 1016 Gene3D - 374 472 - -
Sebi875g00004 1016 Gene3D PAS domain 241 373 - -
Sebi875g00004 1016 SMART HisKA_10 409 474 IPR003661 GO:0000155|GO:0007165
Sebi875g00004 1016 PRINTS Bacterial sensor protein C-terminal signature 642 656 IPR004358 GO:0016310|GO:0016772
Sebi875g00004 1016 PRINTS Bacterial sensor protein C-terminal signature 677 695 IPR004358 GO:0016310|GO:0016772
Sebi875g00004 1016 PRINTS Bacterial sensor protein C-terminal signature 701 714 IPR004358 GO:0016310|GO:0016772
Sebi875g00004 1016 FunFam Putative histidine kinase 5 397 474 - -
Sebi875g00004 1016 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 520 715 IPR003594 -
Sebi875g00004 1016 Gene3D - 473 720 IPR036890 -
Sebi875g00004 1016 Coils Coil 130 157 - -
Sebi875g00004 1016 CDD REC_hyHK_CKI1_RcsC-like 910 1015 - -
Sebi875g00004 1016 SMART HKATPase_4 520 717 IPR003594 -
Sebi875g00004 1016 SMART REC_2 908 1003 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi875g00004 Sebi-Chr875 21945 27378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi875g00004 40 580 Histidine Kinase Gene Family AT5G10720 68.392 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi875g00004 HATPase_c 7.8e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi875g00004 - - gmx:100819520 1615.13