Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi875g00003 ATGGCACAAACAGTCCCAGTGAAAGTAGGAATTGTGGTTGATGTTGGAGGAATATATGGGAAGATGGGTTTGAGTTGCATCAACATGGCCATCTCTGATTTCTATCAAAAACATTCTCGTTACCATACCCGCCTTCTCTTCAACGTCAGGGACTCCCAAGGAGATGTTGTTACTGCTGCTGCTCAAGCTCTAGATCTAATAAAAAATGAGGAAGTGGAAGCCATAATAGGGCCAATAACATCAATGGAGGCCAACTTTGTGATCAAGCTTGGAGAGAAAACTCATGTCCCCATCATAACATTTTCAGCCACAAGTCCTTCACTAACCTCTCTAAGGAGCCAATATTCATTTCGTATATCACAAAATGATTCATCTCAAGTAAATGCCATAACCTCAATTGTTCAAGCTTTTGGGTGGAAAGCAATAGTTCCCATTTACATAGACAATGATTATGGAAAAGGAATCATACCCTTTCTCACCACTTCTTTACAACAAGTCTGTATCCGCATTCCATATCTTAGTGCCATTTCATCTTCAGCCACAGATGATGACATTAGAGAAGAACTTTACATGTTGATGACTATGCAAACTCGAGTGTTTATTGTTCATATGTCTCCCAATCTTGCCTCTAGGCTCTTAACTATAGCAAAAGAGATTGGAATGATGAATGAAGGTTATGTTTGGATTGTAACTGATAGCATGGCTAATGTATTATCATCCTCTTTGGATTCCCAACTCATCAAAGAATCAATGCAGGGAGTACTTGGTGTTAAGACTTATATTCCAAGAACAGAGGAGTTTGATGATTTTAAGGCTAGATGGAGAAGAAAATTCCTTCAAGAATATCCAACCCTTGTTGATATAAAGTTGGATGCTTTTGGAGTGTGGGCCTATGATGCCACCATTGCATTAGCAATGGCTGTGGAGAAAGTTGGAAGAACCAACTTCATGGGTTCAAGAAACATGAGTGGTCTTGAAAGTCTTGGAGTTTCTCAAAGTGGTGAAAAGTTAAGTGAGATTTTGTCAAGTACTAGATTCATTGGCCTCAGTGGAGAGATCAATTTGATTGATGGGCAATTGCAAGCTTCCACCTTTGAGATAATCAATGTGAATGGCAATGGGGAAAGGAGGGTAGGCTTTTGGACATCAAAGAATGGGTTAGTAAGGGATTTGAAATTAACAAATACAAACACTACATATCCTGTTTCAAAGAACAATTTAGGACCCATTATATGGCCAGGGGATACTTATTCTATTCCAAAAGGTTGGGAAGATCCAACAAATGCAAAGAAGTTAAAGATAGGAGTCCCAGTTAGAAAAGGTTTCACTGAATTTGTGAAGGTTACTTGGAATCCCAATACTAATACATCAGAGGTAACTGGTTTCAGCATTGATGTTTTCAAGGCTGCATTGGAATTGTTGCCTTATGCCCTTCCATATGAATTCATCCCATTTGCAAAGGCTAATGGGGAGAGTGCAGGATCATACAATGAGTTGGTCAGCCAAGTCTATTTTGGGAACTTTGATGCTGTAGTGGGAGATCCCACTATTACTGCAAACAGATCCAAGTATGTGGACTTTACTATGCCATACACTGAATCAGGTGTAACTATGATTGTTCTATTGAAAGCAAACAAGCCAGGGAATGCATGGGCTTTCCTGAAACCATTGACATGGAATCTTTGGGCAGCTACTGCTTTTTCCTTTATATTTGTTAGTTTTGTGGTTTGGGTCCTTGAGCACCGTATAAATGAAGATTTTCGAGGGCCTCCTTTGCATCAGATTGGTACCAGCCTATGGTTTTCTTTCTCAGTGGTTGTCTTTGCCCATAGGGAGAAGGTAGTGAGCAACTTGGCTAGATTTGTTGTGATTGTATGGGTTTTTGTGGTACTGATATTGGTTCAAAGCTACACAGCAAGTTTGACTTCATTCTTAACAGTTCAGAAGCTTAGTCCAACTCTCACAAATGTGAATCAGCTTATGAAGAATGGGCTTAATGTTGGATACCCTGAAGGTTCTTTTGTGTATGGGATGTTAAAGAACATGGGATTCCAAGATTTCCAGCTTAAACCTTATATTTCTACAGAAGAATGTGATGACCTCTTCACAAAAGGAAGTGGAAATGGTGGCATTGCTGCTGCTTTTGATGAAACCCCATATTTGAAGTTGATTCTTGAAACTTATTGCTCCAAGTATATCATGGTTGGTCCCACATTTAAAACCGATGGCTTTGGTTATGTTTTTCCTAGAGGTTCACCTTTAGTAGCTGACATTTCAAGGGCAATTTTGAATGTGACACAAGGAGATAGAATGAAAACAATTGAGAATGCATGGTTCAGGAAAAGCAATTGTCCAGATACTAATTCCTCAAATTCTGCAGACAATCTTGGCCTTAATAGCTTCTGGGGACTTTTCCTTATAGCAGGGGTTGCTTCAATTTCATCTCTCTTGATATTTGTAGTTAATTTCTTACATCAGCATAGATATATATGGTTTCAGTCTAATTCCAACACTTCAATGAGTAAACGAATTGGTTCCATGCTTAGCATCTTTGACCAAAAAGATCCGAGTTCCCATGCTTTCAGAAAGAAAAAGATGCAAGGTGAAAGTAAAAATAGCAGCACACATCATCATGGATTAGGAGGACAAGTTGTTGAGTCCTCTACAAGTACTCATTGCCCACCAAGTCCTTCTCCCTCAGGTCAAAGTCAAACGGAATCAAACTTCTCCTTTTATGGAGATCATGGAATGTTTTCTGCAGAGTACCATGGTGATGTTATTAATCCATATGGCCATGAACCTCATGACATGGAGATAACTATTGTGCAAAATGTTCCATCTACGACTATGGAATTGAATGTAGCCCCTGCACAAAATTGA 2880 0.3927 MAQTVPVKVGIVVDVGGIYGKMGLSCINMAISDFYQKHSRYHTRLLFNVRDSQGDVVTAAAQALDLIKNEEVEAIIGPITSMEANFVIKLGEKTHVPIITFSATSPSLTSLRSQYSFRISQNDSSQVNAITSIVQAFGWKAIVPIYIDNDYGKGIIPFLTTSLQQVCIRIPYLSAISSSATDDDIREELYMLMTMQTRVFIVHMSPNLASRLLTIAKEIGMMNEGYVWIVTDSMANVLSSSLDSQLIKESMQGVLGVKTYIPRTEEFDDFKARWRRKFLQEYPTLVDIKLDAFGVWAYDATIALAMAVEKVGRTNFMGSRNMSGLESLGVSQSGEKLSEILSSTRFIGLSGEINLIDGQLQASTFEIINVNGNGERRVGFWTSKNGLVRDLKLTNTNTTYPVSKNNLGPIIWPGDTYSIPKGWEDPTNAKKLKIGVPVRKGFTEFVKVTWNPNTNTSEVTGFSIDVFKAALELLPYALPYEFIPFAKANGESAGSYNELVSQVYFGNFDAVVGDPTITANRSKYVDFTMPYTESGVTMIVLLKANKPGNAWAFLKPLTWNLWAATAFSFIFVSFVVWVLEHRINEDFRGPPLHQIGTSLWFSFSVVVFAHREKVVSNLARFVVIVWVFVVLILVQSYTASLTSFLTVQKLSPTLTNVNQLMKNGLNVGYPEGSFVYGMLKNMGFQDFQLKPYISTEECDDLFTKGSGNGGIAAAFDETPYLKLILETYCSKYIMVGPTFKTDGFGYVFPRGSPLVADISRAILNVTQGDRMKTIENAWFRKSNCPDTNSSNSADNLGLNSFWGLFLIAGVASISSLLIFVVNFLHQHRYIWFQSNSNTSMSKRIGSMLSIFDQKDPSSHAFRKKKMQGESKNSSTHHHGLGGQVVESSTSTHCPPSPSPSGQSQTESNFSFYGDHGMFSAEYHGDVINPYGHEPHDMEITIVQNVPSTTMELNVAPAQN 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi875g00003 959 Gene3D - 319 430 - -
Sebi875g00003 959 Gene3D - 726 786 - -
Sebi875g00003 959 MobiDBLite consensus disorder prediction 859 908 - -
Sebi875g00003 959 Gene3D - 431 550 - -
Sebi875g00003 959 SUPERFAMILY Periplasmic binding protein-like I 6 414 IPR028082 -
Sebi875g00003 959 CDD GluR_Plant 430 779 - -
Sebi875g00003 959 Pfam Ligand-gated ion channel 781 811 IPR001320 GO:0015276|GO:0016020
Sebi875g00003 959 FunFam Glutamate receptor 2.7 687 786 - -
Sebi875g00003 959 Gene3D - 551 674 - -
Sebi875g00003 959 FunFam Glutamate receptor 550 680 - -
Sebi875g00003 959 Pfam Bacterial extracellular solute-binding proteins, family 3 455 780 IPR001638 -
Sebi875g00003 959 CDD PBP1_GABAb_receptor_plant 8 391 IPR044440 -
Sebi875g00003 959 SMART GluR_14 431 781 IPR001320 GO:0015276|GO:0016020
Sebi875g00003 959 Gene3D - 124 290 - -
Sebi875g00003 959 FunFam Glutamate receptor 126 287 - -
Sebi875g00003 959 FunFam Glutamate receptor 330 430 - -
Sebi875g00003 959 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 7 844 IPR015683 -
Sebi875g00003 959 FunFam Glutamate receptor 427 549 - -
Sebi875g00003 959 Pfam Receptor family ligand binding region 26 373 IPR001828 -
Sebi875g00003 959 PIRSF IGluLR_plant 2 910 IPR017103 -
Sebi875g00003 959 MobiDBLite consensus disorder prediction 873 908 - -
Sebi875g00003 959 SUPERFAMILY Periplasmic binding protein-like II 410 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi875g00003 Sebi-Chr875 12012 17102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi875g00003 3 870 Ion Channels AT2G29120 51.708 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi875g00003 K05387 - qsa:O6P43_019170 1221.07