Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi873g00013 ATGGGCGTCACAGTGGACTTGAATCCTTTTAGTGATGACAAAAATGAAATAATTGAAGATTGCCTTCCAAACACGGAGGAGGAGGGCGATACTTCCGTGTATAGTAGCTACATTGAGGCAGCTGAGAAATCTATTTCTACAAAGACCATATTCGCGGAGAAAAACTTCACCGTTTTGGATGAATCTAACATCAAGCGGCTTCAAGAGGCCGATATCAATCAGGTTTCGTATGTTCTTTGCATATCAAAATTTTCTGCTTGCCTTTTGCTCCGTCATTGTGAGTGGAGCGTGACTAAAGTGCTTGAAACATGGATTGATAATGAAGAAAGAGTTCGCAACGCTGTTGGGTTTCTTAAACAGCCACAGATTAGGTCAGCAGGGTGTGGCCATCCATTTTGCATGATTTGTTGGATGCGCTATATGGATACAAAGATTGACGAGGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTCTTGTGGTGCAGCTGTGGATGGAAACATGGTTCATGAACTTACAAGTGAATCAAGTAAGAAAAGTTTTTGTTGGAGATGTGGGGAAGAAGCTCATAGGCCTGTGGATTGTGAAACAGCACATCAATGGATAAGAAAGAATACGTCCGAATCTGAAATTGTTGACTGGCTTGTTGCTCATACTAAACCATGTCCTCAGTGCAAGATACCCATTGAGAGAAGCGCAGGGTCCACACACATGATGTGCAATTGTGGATTTCAATTTTGTTGGTTATGTCTCGGTGATTGGTTTACTTTTAGACCTTGCAAATGCCATAATAATCAGTTTCAAGAGACTAGCAAGAAGGAACTAGAAAGTGAGATGTCAAGGGGTTATTTTGATAGGCCTGAAACTGATTTTAATTTTATAATTGAGGCTTGGAAACAAGTGATTGAATGTAGAGGGATACTAAAATGGTGTTATACATATGGATATTATCTCCCTGATAATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCATCATAAGGCTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACTGAGAGAGTATCTAAATGTTGAGCGAAAAGATGACTTTAATGATTTTTGTTTGAAGCTAGTCAATTTGACTAATGTGACCAAGAACTATTTTGACAAGTTGGTGAAAGCGTTAGAGGATGGCCTTGTTGATGTGCATGTGAATAACGACACGAGTATGAAAAGAAAATCAAGTGAAATAGGCAAGACCTCTTATCGAAGGGGAACCAAGAGAATAATTACCATTGATGGACTGGCCAAAAATGATCTCTGGCAATGTGAGGCATGTGGTCATTACAATTCTGCCTCTTCTCTTGTGTGTCAGAATACTAATTGCAGACAATACTTTGATTAG 1389 0.3974 MGVTVDLNPFSDDKNEIIEDCLPNTEEEGDTSVYSSYIEAAEKSISTKTIFAEKNFTVLDESNIKRLQEADINQVSYVLCISKFSACLLLRHCEWSVTKVLETWIDNEERVRNAVGFLKQPQIRSAGCGHPFCMICWMRYMDTKIDEGPYKCLTLRCPEPSCGAAVDGNMVHELTSESSKKSFCWRCGEEAHRPVDCETAHQWIRKNTSESEIVDWLVAHTKPCPQCKIPIERSAGSTHMMCNCGFQFCWLCLGDWFTFRPCKCHNNQFQETSKKELESEMSRGYFDRPETDFNFIIEAWKQVIECRGILKWCYTYGYYLPDNIKVKKDFFEYIHHKAEVTFEKLDQCVGMELREYLNVERKDDFNDFCLKLVNLTNVTKNYFDKLVKALEDGLVDVHVNNDTSMKRKSSEIGKTSYRRGTKRIITIDGLAKNDLWQCEACGHYNSASSLVCQNTNCRQYFD 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi873g00013 462 SUPERFAMILY RING/U-box 123 181 - -
Sebi873g00013 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 192 IPR013083 -
Sebi873g00013 462 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 55 313 IPR031127 GO:0004842|GO:0016567
Sebi873g00013 462 SUPERFAMILY RING/U-box 216 269 - -
Sebi873g00013 462 ProSiteProfiles TRIAD supradomain profile. 99 276 IPR044066 -
Sebi873g00013 462 Pfam IBR domain, a half RING-finger domain 218 256 IPR002867 GO:0008270
Sebi873g00013 462 Pfam IBR domain, a half RING-finger domain 155 197 IPR002867 GO:0008270
Sebi873g00013 462 SMART ibrneu5 138 197 IPR002867 GO:0008270
Sebi873g00013 462 SMART ibrneu5 201 264 IPR002867 GO:0008270
Sebi873g00013 462 Gene3D - 193 286 - -
Sebi873g00013 462 ProSiteProfiles Zinc finger CCHC-type profile. 184 197 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi873g00013 Sebi-Chr873 308983 310692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi873g00013 53 453 ARIADNE family AT1G65430 35.962 9.17e-106 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi873g00013 K11968 - ini:109162002 357.066