Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi872g00002 ATGGCCTTTAAGCCTCAACTAAACCAGTCCTTAGCTGTGATACAGAGCATGTTTGATGTGTTACCAAGTGACATCACTGTTGAAGGCAATGAATGGGATTACATATTCATCAGAAAAAACTGTTCTTGTGCTGCTGGGATGAAGAAGTATGTATCTAACACCACATTCACTGTGAAATCCAATGAAGGGTTTGTGTATGACATGGTGATGGATGCCTATGATGGACTTGCTTTCTTGCCCAACACCACCCGTTGGGCAAGACAAGGTGCTGTCATACCATTGAGCTTGTTCTGTAGCTGTTCCAGTGGACTGTGGAACTATTTGATGAGTTATGTCATCCGAGATGGGGATAGTATTGAATCATTGGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGGCATCAGCAATCCTGATACTGCCATTGTTGGTTCTCTATATTATGTACCTCTGAATTCAGTTCCTGGTGATCCTTATCACCTGAAGAATGATACTCCTCCAGTTCCTGTCCCTTCTCCATCTGTTGATAATTTTTCAGCTTATCAAATCAACAGTAAGGCTCATGTACCCTATGGATGGGTCATAGGAGGTCTAGGGGTTGGTCTTGCGCTAGTAATATTAAGCATGATTCTGTGTGTGTCCCTGAGATCATCCAACTGTTTTGTTGAAGATAGAAATCATGCAAAAGATGCTGAGGGCAAGATCTCTCATAAGTTCCATATTCTTGGGAGTGCAAGTTTGTGTTGTGGTTCTGGAAGATACATATGTGGCAAAAGCAAACACGTAAACCAGAAGCAAACTGATGGTGAATCCAGTAGTGATCAAACTACTGTTCCCAAAACTTCAACTCTAAGACCTGAGGTTTTTGACTTGGATAAGCCAGTAGTTTTTACATATGAAGAGATTTTTTCCTCAACTGATGGTTTCTCTGATTCAAATCTGCTTGGGCACAGAACATATGGTTCTGTTTTCTATGGTCTCCTTCGTGATCAGGAAGTTGCTATTAAAAGAATAAAGGCTACTAAAACTAAAGAATTTATGTCAGAGATGAAAGTTCTGCACAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGTTATGCGGCTAGTCAAGATGAGCTTTTCCTTATTTATGAATATGCTCAAAAGGGTTCACTCAGCAGCCATTTGCATGATCCTCAAAATAAGGGTCATCCATCACTTTCTTGGATCACAAGGGTCCAGATTGCGCTTGATGCTGCTAGAGGCCTTGAATACATACATGAGCATACAAAAACTCGTTATGTCCATCAAGATATCAAGACAAGCAACATTTTACTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTGTTGGTAAAACAAATGAGGGAGAAACCACAACAACCAAAGTTGTTAGCACATATGGATACCTTGCTCCAGAATACTTGAGCAATCGCCTTGCAACGACTAAAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGATTATATCAGGGAAGAAGGCCATTATTCAAACACAAGGTCCTGAAAGACGATCACTAGCATCTATAATGTTGGGAGTTCTTAGGAACGTACCAGATTCCATGAGCATGTCAGCCATGAGAGACCACATTGATCCTATTATGATGGGTCTGTATCCCCATGATTGTGTTTTCAAGGTGGCCATGCTGGCAAAGCAATGTGTAGATGAGGATCCCATTTTACGTCCTGATATGAAGCAAGTTGTGCTTTCCCTCTCACAGAACCTCATGTCTTCTGTTGAGTGGGAAGCGACTCTAGCGGGGAACAGCCAGGTATTTAGTGGCCTTATTCAGGGAAGATAG 1857 0.4136 MAFKPQLNQSLAVIQSMFDVLPSDITVEGNEWDYIFIRKNCSCAAGMKKYVSNTTFTVKSNEGFVYDMVMDAYDGLAFLPNTTRWARQGAVIPLSLFCSCSSGLWNYLMSYVIRDGDSIESLASRFGVSMDSIETVNGISNPDTAIVGSLYYVPLNSVPGDPYHLKNDTPPVPVPSPSVDNFSAYQINSKAHVPYGWVIGGLGVGLALVILSMILCVSLRSSNCFVEDRNHAKDAEGKISHKFHILGSASLCCGSGRYICGKSKHVNQKQTDGESSSDQTTVPKTSTLRPEVFDLDKPVVFTYEEIFSSTDGFSDSNLLGHRTYGSVFYGLLRDQEVAIKRIKATKTKEFMSEMKVLHKVHHANLVELIGYAASQDELFLIYEYAQKGSLSSHLHDPQNKGHPSLSWITRVQIALDAARGLEYIHEHTKTRYVHQDIKTSNILLDASFRAKISDFGLAKLVGKTNEGETTTTKVVSTYGYLAPEYLSNRLATTKSDVYAFGVVLFEIISGKKAIIQTQGPERRSLASIMLGVLRNVPDSMSMSAMRDHIDPIMMGLYPHDCVFKVAMLAKQCVDEDPILRPDMKQVVLSLSQNLMSSVEWEATLAGNSQVFSGLIQGR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi872g00002 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Sebi872g00002 618 Gene3D Transferase(Phosphotransferase) domain 1 386 605 - -
Sebi872g00002 618 Gene3D Phosphorylase Kinase; domain 1 285 384 - -
Sebi872g00002 618 Pfam LysM domain 111 148 IPR018392 -
Sebi872g00002 618 Pfam Protein tyrosine and serine/threonine kinase 318 589 IPR001245 GO:0004672|GO:0006468
Sebi872g00002 618 Gene3D LysM domain 106 160 IPR036779 -
Sebi872g00002 618 SUPERFAMILY LysM domain 109 154 IPR036779 -
Sebi872g00002 618 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 612 IPR044812 GO:0019199|GO:0045087
Sebi872g00002 618 SMART serkin_6 313 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi872g00002 618 FunFam PTI1-like tyrosine-protein kinase 3 385 604 - -
Sebi872g00002 618 ProSiteProfiles LysM domain profile. 109 153 IPR018392 -
Sebi872g00002 618 SMART LysM_2 110 154 IPR018392 -
Sebi872g00002 618 ProSiteProfiles Protein kinase domain profile. 313 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi872g00002 618 SUPERFAMILY Protein kinase-like (PK-like) 291 590 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi872g00002 Sebi-Chr872 65557 69813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi872g00002 1 618 Receptor kinase-like Gene Family AT1G51940 63.550 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Sebi872g00002 PK_Tyr_Ser-Thr 5.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi872g00002 - - gmx:100796989 996.112