Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi870g00011 ATGGGTGAAAAAGAGTGGTACTTCTTTAGCCTACGTGACCGAAAGTACCCAACTGGATTACGTACTAATAGGGCCACAGAAGCTGGTTATTGGAAAGCCACTGGCAAAGACAGAGAGATTTATAGCTCCAAAACTTGCTCCCTTGTAGGCATGAAGAAAACCTTAGTTTTCTATAGAGGCAGAGCTCCCAAAGGAGAAAAGAGCAACTGGGTCATGCATGAATATCGCCTTGATGGCAAATTTGCTTATCATTACCTCTCTAGAAGCTCCAAGGATGAGTGGGTCATATCACGTGTGTTTCAAAAGAACAACACAAGTGGTGGTGGCTCCACCGTGTCAGCCACCACCACCGCTTCTAAAAAGACAATGAGAACCAGTACTTCATCTACTACCATGAGTCTCTGCCCTGAACCAGGCTCACCTTCTTCCATTTACCTTCCACCGCTTCTAGAATCTTCTCCCTACACTCCAACCACCGCCACCTCCTCCGCCGCCGCATTTAACGACCGTGAGAGCTGCTCCTTTGACAGCGCCACCGTTCAAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCGCCGTTGCCGCTGATAACTTCGCCAACGCCGGCTTTGACTTTGCTCCGCCGCAGCAGCAGCCACCTCAGCTCGCCGTGGACCCTTTCTCTCGGTTCCAGAGGAATGTTGTTGGTGTCTCTGCTTTCCCTAGCCTGAGATCGTTGCAAGAGAATCTTCAATTGCCGTTCTTTTTCTCACCGGCGGCGGCGCAGCCCGTGCATGGTGACGTGGCAGGTTGGCCGGTGCCGGAGGAGCATAGGGTGGCTGATGGTGGTTCCGGTATGGCATTGGGAGCTTCCGAGCTTGATTGCTTGTGGGGCTTTTGA 882 0.5193 MGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLDGKFAYHYLSRSSKDEWVISRVFQKNNTSGGGSTVSATTTASKKTMRTSTSSTTMSLCPEPGSPSSIYLPPLLESSPYTPTTATSSAAAFNDRESCSFDSATVQREHVSCFSTISAVAADNFANAGFDFAPPQQQPPQLAVDPFSRFQRNVVGVSAFPSLRSLQENLQLPFFFSPAAAQPVHGDVAGWPVPEEHRVADGGSGMALGASELDCLWGF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi870g00011 293 Pfam No apical meristem (NAM) protein 2 77 IPR003441 GO:0003677|GO:0006355
Sebi870g00011 293 Gene3D NAC domain 1 106 IPR036093 GO:0003677|GO:0006355
Sebi870g00011 293 ProSiteProfiles NAC domain profile. 1 102 IPR003441 GO:0003677|GO:0006355
Sebi870g00011 293 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 168 - -
Sebi870g00011 293 SUPERFAMILY NAC domain 2 102 IPR036093 GO:0003677|GO:0006355
Sebi870g00011 293 MobiDBLite consensus disorder prediction 105 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi870g00011 Sebi-Chr870 241016 242467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi870g00011 1 293 NAC Transcription Factor Family AT5G53950 48.276 4.08e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi870g00011 NAM 6.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi870g00011 - - gmx:100788671 386.341