Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi86g00100 ATGGCACCCAGTTTTGATTTTGTTTCAAGCCTCCTTTGTGCTGAAGATAGCAGTGTTTTTGACGATGGGGATGTGTACGAGGAAACGGGGCGTTCTAGGTACCATCAGAGGAGTGAGCAGTTTGGTGACCCAGATGGGTTGCCATTGCAGAGTGAAGAGTGTTTGGCGATGATGATGGAAAAGGAATGTCAACACTTGCCTCGTGCTGATTACTTCAATAGGCTACAGAGTGGGGATTTGGACTTTGGGGCCAGAAAGGAAGCCATTGATTGGATTGAAAAGGTTCGAGCGCATTTCGGTTTTGGTCCTCTCTCTGCATATCTATCCATAAATTACTTGGATCGGTTCCTTTCTGCATATGAATTACCAAAGGGAAGAGCTTGGACAATGCAACTATTGGCTGTGGCATGCTTATCTCTTGCAGCCAAAATAGAGGAAACTGAGGTTCCTCTGTGTCTTGATTTGCAGGTGGGTGAATCCAAGTTTGTATTTGAGGCTAAAACCATACAGAGAATGGAGCTTGTGGTACTGAGCACATTGAGGTGGAGAATGCAAGCAATTACTCCATTCTCCTTCATTGATTATTTCCTTTCCAAGATCAATGATGATCAAAGTTCATTTAGATCTTCAATTTTGCGATCCACCCAACTCATATTAAGCACCTTAAAAGGAATTGACTTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCAGTGGCTACATATGTTGTGGGGGAAACCAAAACAATTGACACTGCCAAAACAATTTCAGTTCTGATTCAACATGTAGAAAAGGAGAGATTATTGAAGTGTGTCACAATGATCCAAGAGCTGTCATCAAACAGTGCATCTGTCCCTTGTGTGCCACAAAGCCCAATAGGTGTGTTGGATGCTTTGTGCTTCAGCTACAAAAGTGATGACACAAATGCTGGTTCATTTTCTTCACATAATAGTCCAGAAGCTAAAAGGAGGAAGCTAAACAAAACCTGTGGAGCAGAGCTTTTGTAG 1008 0.4266 MAPSFDFVSSLLCAEDSSVFDDGDVYEETGRSRYHQRSEQFGDPDGLPLQSEECLAMMMEKECQHLPRADYFNRLQSGDLDFGARKEAIDWIEKVRAHFGFGPLSAYLSINYLDRFLSAYELPKGRAWTMQLLAVACLSLAAKIEETEVPLCLDLQVGESKFVFEAKTIQRMELVVLSTLRWRMQAITPFSFIDYFLSKINDDQSSFRSSILRSTQLILSTLKGIDFLEFKPSEIAAAVATYVVGETKTIDTAKTISVLIQHVEKERLLKCVTMIQELSSNSASVPCVPQSPIGVLDALCFSYKSDDTNAGSFSSHNSPEAKRRKLNKTCGAELL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi86g00100 335 FunFam D6-type cyclin 182 273 - -
Sebi86g00100 335 SMART Cyclin_C_2 187 302 IPR004367 -
Sebi86g00100 335 Pfam Cyclin, N-terminal domain 54 184 IPR006671 -
Sebi86g00100 335 PANTHER CYCLINS 51 280 IPR039361 -
Sebi86g00100 335 FunFam D2/4-type cyclin 68 181 - -
Sebi86g00100 335 SUPERFAMILY Cyclin-like 43 184 IPR036915 -
Sebi86g00100 335 Pfam Cyclin, C-terminal domain 187 284 IPR004367 -
Sebi86g00100 335 SUPERFAMILY Cyclin-like 169 278 IPR036915 -
Sebi86g00100 335 Gene3D - 55 274 - -
Sebi86g00100 335 SMART cyclin_7 90 178 IPR013763 -
Sebi86g00100 335 CDD CYCLIN_AtCycD-like_rpt2 187 275 - -
Sebi86g00100 335 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Sebi86g00100 335 Gene3D - 68 185 - -
Sebi86g00100 335 CDD CYCLIN_AtCycD-like_rpt1 84 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi86g00100 Sebi-Chr86 1781626 1783485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi86g00100 35 312 Core Cell Cycle Gene Families AT2G22490 46.865 1.32e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi86g00100 K18810 - gmx:547739 498.049