Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi86g00083 ATGAAAGGAGAATATGTAGAGCAACATCCCAAGAGTGAAACTTCTGATATGTTCTCAAAGCTTCACCACCAAAACCAATCACAACCTCTACACCACCCATTCCCTCACCACCCTTTCCAACTCTCTGCGGAGGATGATAACCGTAGCGGAAGCGGCGGCGCCGCCACCCCTAACACCGCTCAGAAGCCCAACTCATCCGGCGACGGTGCAACCATTGAGGTAGTGAGGCGGCCCAGAGGGCGCCCACCTGGGTCCAAAAACAAGCCCAAACCACCAGTCATCATAACCCGTGACCCAGAGCCCGCCATGAGCCCATACATTCTCGAAGTATCAGGCGGAAACGACGTCGTCCAAGCTATAGCACTTTTCAGTCGCCGCAAGAACATGGGCCTATGCATCCTAACGGGTTCTGGAAGCGTCGCTAACGTCACTCTTCGTCAACCTTCAACCACTCCAGGAGCTACCGTTACTTTTCACGGCCGTTTCGACATCCTCTCCTTATCCGCCACCTTCCTTCCTCAACAATCAGCGGTTCCCAACGGCTTCGCCATCTCCCTCGCCGGACCGCAGGGCCAGATCGTCGGAGGATTAGTCGCCGGCGCTTTGATAGCTGCGGGGACTGTGTTCATCATCGCCGCTTCCTTCAACAACCCGTCGTATCACAGGCTTCCGACGGAAGAAGAGCCTCGAAACTCAGTATCCACCGGAGATGGACATTCGCCGCCAGTCTCCGGCGGCGGTGATGATAACGGGCATGGTCAAGCGGCGTCGTGTGGGATGTCCATGTACAGCTGTCACATGCCGTCGGATGTGATCTGGGCTCCAGCGGCTAGACCACCTTACTGA 846 0.5626 MKGEYVEQHPKSETSDMFSKLHHQNQSQPLHHPFPHHPFQLSAEDDNRSGSGGAATPNTAQKPNSSGDGATIEVVRRPRGRPPGSKNKPKPPVIITRDPEPAMSPYILEVSGGNDVVQAIALFSRRKNMGLCILTGSGSVANVTLRQPSTTPGATVTFHGRFDILSLSATFLPQQSAVPNGFAISLAGPQGQIVGGLVAGALIAAGTVFIIAASFNNPSYHRLPTEEEPRNSVSTGDGHSPPVSGGGDDNGHGQAASCGMSMYSCHMPSDVIWAPAARPPY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi86g00083 281 Gene3D - 104 235 - -
Sebi86g00083 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 229 - -
Sebi86g00083 281 CDD DUF296 105 215 IPR005175 -
Sebi86g00083 281 ProSiteProfiles PPC domain profile profile. 100 236 IPR005175 -
Sebi86g00083 281 MobiDBLite consensus disorder prediction 44 68 - -
Sebi86g00083 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 217 IPR005175 -
Sebi86g00083 281 MobiDBLite consensus disorder prediction 220 252 - -
Sebi86g00083 281 FunFam AT-hook motif nuclear-localized protein 104 234 - -
Sebi86g00083 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 46 274 IPR014476 GO:0003680
Sebi86g00083 281 MobiDBLite consensus disorder prediction 1 18 - -
Sebi86g00083 281 PIRSF ESCAROLA 8 276 IPR014476 GO:0003680
Sebi86g00083 281 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi86g00083 Sebi-Chr86 1516742 1517587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi86g00083 1 281 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 58.863 1.86e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi86g00083 - - gmx:100815772 419.468