Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi86g00047 ATGCCTCACAGAGCCACTTACTTTTTCCCGCGTCAGTTTCCTGAGCGTGGAGGGTTAGATGAATCATCCAAAAAGCTATTAGATCACGAGAAGGAGAAAATCGTCAACTCAATCAAATCGGATACCTTTGGCGTTGAAAGCGACGTTCCTAAAAAGTCACTTTCGTCGTCAACTACCACTGCTCCAACCAAACACGACGTCGTTCTCTCCTCTGCTAAGCACTCCGCTGTTTCCGACCTTTTCGCCGCCGGTGACAAGTACCGAATCAAACACAAGCAAATTGCCGCTTTCTGCGATTGGTTAATCGACAAAAAAGGAGATCACTCCGGTCACCACCTCCGCCGCTTGTCCACAACCTCCGAGGAGGACCGCGACCTTCTTCTACCTCCGCCGGAGACCGTCGTCAAGGACACTGCCGTCGACCGAAGTTTTGACCGGCAGGAGGAAACGCCGTCGTCTCGGGTTTCCACCATTACCACCACCACTCCAGCGAGGAGACAGAAGGAGGAAGAAGAAAACAAAGACACATTGGCGAAGAAGTCCGAAGAAAGCTACATCTTGCAACTTACGCTGGCAAAGAGGCTCACTAATTTGGCTAGTCTCGTGACTGAGCCTGTTCTTGCACCTTGCACTGAAACTTGGGATGCTGAATCTGTTTCTTATCGTTTATGGGTGAGTGGGTGCTTGTCATACTCTGATAAGATATCTGATGGTTTTTATAATATATTGGGGGTGAATCCGTATCTGTGGGTGATGTGCAATGATGTGGAGGAAGGTCGGAGGATACCTACTTTGATGGCGCTTAAAGCTATTGAACCCAGCGAGACATCTATGGAGGTGGTTCTTGTTGATAGGCATGAGGACTCTCGCCTGAAGCTGCTTCATGATAAGGCACAAGAGTTGTATTGTGCTTCTGAGAACACCTTGGTGTTGGTGGAACAACTAGGAAAACTTGTTGCCATATATATGGGGGGCACGTACCCGGTGGAACAAGGAGATCTCCACAAGCGCTGGAAATTGGTTAGTAAAAAGTTGAGGAATTTTCAAAAGTGTGTTGTGCTTCCCATTGGCAGCCTATCTACTGGGCTTTGTAGGCATCGGGCAATTCTCTTCAAGAGATTGGCAGATTACATAGGTTTGCCTTGTCGCATAGCTCGTGGTTGCAAGTATTGTGTTGCAGATCACAGATCCTCTTGCCTAGTCAAGATTAAAGATGACAAGCAGCTCTCAAGGGAATACGTAGTTGACCTAGTTGGGGAACCAGGAAATATCCATGGGCCAGATTCCTCAATCAATGGAGCATATGTATCTTCGATGCCTTCCCCATTTCAAATTTCTCATTTAAAAGAATTACAATCACCTTATATGGATGGTGCAGCATGTTCTCAATCTATAAGTTTTGATCGTAATTCTGTTAATCCTGAAAGTCATCCATATTCAGGCTGTGGACAGAATGATCTACAAGTTAAAGAAACTGATTTGCTAAAACATCATAAGGGCTCCATTTATGCTTCAGTTGATCAAACCTGTGAAGGAACAGAGCCACCTCTAAATCCTTTTGGTTTAAAAGGGAATGAAGACGAATGTGCGGTTTTAAGTTCAATTTTGCCTACCATTCATGAAGATGTTTCTAAAGCTCTTCATCCTGCCAGTGAAGCATCATTGCATGAATATCCAATAGTTAGTGAAGATGCAGTTGTAGTACAAGAAACTTCCAACAATGAGATCATTGTAACTGGAAGTTCAGTGGTAAAGAGTACTTTCAAGCAATGTATACTTAGTTCATCCATCCAGTCAGAACTGAAACAGCTAGACAACAAAATTGAAAATCAGGGCTGTTTACCAGCTGGGAGTGTTCCAAGATATGTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAAATATCATGGGATGATTTACGAATTAAAGAGCGTGTCGGTGCTGGCTCATTTGGGACAGTGCACCGTGCTGAATGGCATGGATCAGATGTTGCAGTCAAGGTTTTAACGGTTCAGGATTTCCATGATGATCAATTGAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGTGTTCGCCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACAAAACGACCCCATCTATCAATAGTGACAGAGTATTTACCTAGGGGTAGTTTATACCGCCTAATACATAGGCCAGCATCTGGTGAAATTATGGATAATAGGAGAAGATTACGGATGGCTCTGGATGTGGCTAAAGGGATCAATTATCTCCATTGTCTGAAACCTCCAATTGTGCACTGGGATCTCAAGTCCCCAAACTTGTTAGTGGACAAAAATTGGACTGTGAAGGTTTGTGACTTTGGGTTGTCCAGATTTAAGGCAAACACTTTCATACCATCAAAATCTGTTGCTGGAACACCTGAGTGGATGGCTCCAGAATTTCTCCGTGGAGAACCTTCAAATGAGAAATCTGATGTATACAGTTTTGGAGTTATCTTATGGGAACTTGTGACCATGCAACAACCATGGAGTGGACTTAGCCCTGCCCAGGTGGTTGGAGCTGTTGCTTTCCAGAATAGGAGGCTTGCTATCCCTCCAAACATCTCCCCAGCATTGACCTCCCTCATGGAATCTTGTTGGGCTGATGACCCTGGTCAACGCCCATCTTTTGGTGGGATAGTTGAGTCAATAAAGAAGCTGCTGAAGTCTCCGGCAGAGATGATAAAAATGGGTGATACATAA 2736 0.4459 MPHRATYFFPRQFPERGGLDESSKKLLDHEKEKIVNSIKSDTFGVESDVPKKSLSSSTTTAPTKHDVVLSSAKHSAVSDLFAAGDKYRIKHKQIAAFCDWLIDKKGDHSGHHLRRLSTTSEEDRDLLLPPPETVVKDTAVDRSFDRQEETPSSRVSTITTTTPARRQKEEEENKDTLAKKSEESYILQLTLAKRLTNLASLVTEPVLAPCTETWDAESVSYRLWVSGCLSYSDKISDGFYNILGVNPYLWVMCNDVEEGRRIPTLMALKAIEPSETSMEVVLVDRHEDSRLKLLHDKAQELYCASENTLVLVEQLGKLVAIYMGGTYPVEQGDLHKRWKLVSKKLRNFQKCVVLPIGSLSTGLCRHRAILFKRLADYIGLPCRIARGCKYCVADHRSSCLVKIKDDKQLSREYVVDLVGEPGNIHGPDSSINGAYVSSMPSPFQISHLKELQSPYMDGAACSQSISFDRNSVNPESHPYSGCGQNDLQVKETDLLKHHKGSIYASVDQTCEGTEPPLNPFGLKGNEDECAVLSSILPTIHEDVSKALHPASEASLHEYPIVSEDAVVVQETSNNEIIVTGSSVVKSTFKQCILSSSIQSELKQLDNKIENQGCLPAGSVPRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPASGEIMDNRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQVVGAVAFQNRRLAIPPNISPALTSLMESCWADDPGQRPSFGGIVESIKKLLKSPAEMIKMGDT 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi86g00047 911 ProSiteProfiles Protein kinase domain profile. 641 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi86g00047 911 Gene3D Transferase(Phosphotransferase) domain 1 720 907 - -
Sebi86g00047 911 CDD STKc_MAP3K-like 647 895 - -
Sebi86g00047 911 ProSitePatterns Protein kinases ATP-binding region signature. 647 668 IPR017441 GO:0005524
Sebi86g00047 911 FunFam Serine/threonine-protein kinase isoform 1 631 719 - -
Sebi86g00047 911 MobiDBLite consensus disorder prediction 140 177 - -
Sebi86g00047 911 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 192 898 - -
Sebi86g00047 911 SMART serkin_6 641 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi86g00047 911 FunFam Serine/threonine-protein kinase CTR1 720 905 - -
Sebi86g00047 911 PRINTS Tyrosine kinase catalytic domain signature 822 844 IPR001245 GO:0004672|GO:0006468
Sebi86g00047 911 PRINTS Tyrosine kinase catalytic domain signature 715 728 IPR001245 GO:0004672|GO:0006468
Sebi86g00047 911 PRINTS Tyrosine kinase catalytic domain signature 756 774 IPR001245 GO:0004672|GO:0006468
Sebi86g00047 911 PRINTS Tyrosine kinase catalytic domain signature 866 888 IPR001245 GO:0004672|GO:0006468
Sebi86g00047 911 SUPERFAMILY Protein kinase-like (PK-like) 619 893 IPR011009 -
Sebi86g00047 911 ProSitePatterns Serine/Threonine protein kinases active-site signature. 762 774 IPR008271 GO:0004672|GO:0006468
Sebi86g00047 911 Pfam Ethylene-responsive protein kinase Le-CTR1 216 424 - -
Sebi86g00047 911 Pfam Protein tyrosine and serine/threonine kinase 641 894 IPR001245 GO:0004672|GO:0006468
Sebi86g00047 911 Gene3D Phosphorylase Kinase; domain 1 634 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi86g00047 Sebi-Chr86 1012542 1020725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi86g00047 1 909 MAP Kinase Kinase Kinase AT4G24480 55.657 0.0 1033
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Sebi86g00047 PK_Tyr_Ser-Thr 1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi86g00047 - - gmx:100808435 1499.18