Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi86g00042 ATGTACGACCCTATGAACATGCCCAACCAGATCGAAGACAACGACGGCGACAGTCACATTCACTACGATTCGCATGCCCTCGAAGACGGTAGCGGCGGAGTCGAAGATGTTTCCACCGATACTGTCTATGTTTCCGGTGGTGGAGGCCCTGACATGTCTATTCAACGCTGCGATGATTCTAGCCAGCTCACGCTTTCGTTTCGTGGCCAAGTTTATGTATTTGATTCTGTTACACCTGATAAGGTTCAAGCGGTGTTGTTACTGTTAGGAGGATGTGAATTATCTTCAGGTTCGCAATGTTTGGAGATATCACCTCAAAATCAGAGGGATGCAGCGGAATATCCTCCTAAATGTAGCCAACCACAGCGTGCTGCCTCGTTAATTAGGTTCCATCAGAAGAGGAAAGAGCGGTGTTTTGATAAGAAAGTTAGATATAGTGTGCGTCAAGAAGTTGCACTCAGGATGCAACGTAATAAGGGTCAGTTTACATCATCTAAGAAACAAGATGGAGCCAATAGTTGGGGCGCAGATCAAGAGTCAGTGCAGGATGCTGTTCAATCAGAAACTTCATGCACACATTGTGGAATAAGTTCCAAATCCACCCCAATGATGCGAAGGGGGCCATCTGGTCCACGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTACTTTGAGGGATCTTTCTAAGAGGAACCAAGAACACTCTATTGCGCCACCTGAGCAGGTCGGTGAGGGTAACGACTTGAATTGTCGGACTGCTATGCCTGCACATAATGATGTTAATGATAAAACAGCTTTGGTATCTGATCGTTGA 825 0.463 MYDPMNMPNQIEDNDGDSHIHYDSHALEDGSGGVEDVSTDTVYVSGGGGPDMSIQRCDDSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSGSQCLEISPQNQRDAAEYPPKCSQPQRAASLIRFHQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKQDGANSWGADQESVQDAVQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSIAPPEQVGEGNDLNCRTAMPAHNDVNDKTALVSDR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi86g00042 274 SMART GATA_3 185 238 IPR000679 GO:0006355|GO:0043565
Sebi86g00042 274 Pfam tify domain 60 90 IPR010399 -
Sebi86g00042 274 MobiDBLite consensus disorder prediction 158 180 - -
Sebi86g00042 274 ProSiteProfiles Tify domain profile. 56 91 IPR010399 -
Sebi86g00042 274 ProSitePatterns GATA-type zinc finger domain. 191 218 IPR000679 GO:0006355|GO:0043565
Sebi86g00042 274 SMART tify_2 56 91 IPR010399 -
Sebi86g00042 274 Pfam GATA zinc finger 191 227 IPR000679 GO:0006355|GO:0043565
Sebi86g00042 274 CDD ZnF_GATA 190 236 IPR000679 GO:0006355|GO:0043565
Sebi86g00042 274 Gene3D - 182 240 IPR013088 GO:0006355|GO:0008270
Sebi86g00042 274 ProSiteProfiles GATA-type zinc finger domain profile. 185 243 IPR000679 GO:0006355|GO:0043565
Sebi86g00042 274 Pfam CCT motif 123 165 IPR010402 GO:0005515
Sebi86g00042 274 ProSiteProfiles CCT domain profile. 123 165 IPR010402 GO:0005515
Sebi86g00042 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 236 - -
Sebi86g00042 274 PANTHER GATA TRANSCRIPTION FACTOR 28 4 245 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi86g00042 Sebi-Chr86 871593 876413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi86g00042 60 241 Tify Gene Family AT4G24470 68.478 2.22e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi86g00042 CCT 3.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi86g00042 - - pvu:PHAVU_009G035400g 392.889