Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi869g00004 ATGTCCCATTCCTACAAAGCTAAGCTACCTACCTATTTCTCAAGCCACTCAAGTTTGGACCACACTACACCATTACAAACCCCGCTACAGAAAGAACCATCATCAAGCAAAAGCCCTCACAAAGCCATGGCGGATCCAACCTCCTCTAACCCTGATAAGGATCAATCCTCTTCCGACCCGGGTGGGATGCGAAGTGTTGAATTCAAGGTAATAGAGACTGATCCTGGTGAGTACTGTGTTGTTGCACCTGACACTGAAATTTTCTGTGAGGGAGAACCAATCAAAAGGGAAGATGAGGAGAGATTAAATGAAGTTGGTTATGATGATGTTGGTGGTGATTCAATTGCTCCAAAGAGAGAAAAGACACATGGTGAAGTGGAGAGGCGTATTGTTTCACAGCTTTTGACTCTAATGGATGGCCTCAAGTCTCGATCACATGTTATTGTTATGGGAGCGACAAATAGGCCCAATAGTATTGATCCTGCTTTGAGAAGGTTTGGAAGGTTTGATCGGGAGATTGACATTGGTGTACCAGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAACATGAAACTTTCAGACAATGTTGATCTTGAAAGAGTTGCTAGAGATACCCATGGTTATGTTGGAGCAGATCTTGCTGCTCTTTGCACAGAGGCTGCACTACAGTGTATCCGGGAGAAAATGGATGTCATTGACTTAGAGGATGAAACGATAGATGCTGAGGTGTTGAATTCCATGGCTGTGACTAATGAACACTTCCAAACAGCTTTAAGTTCTTCAAACCCATCTGCCCTGCGTGAAACAGTTGTGGAGGTTCCAAATGTTTCCTGGGATGATATTGGAGGCTTAGAGAATGTCAAAAGGGAGCTTCAGGAGACTGTTCAATACCCAGTGGAACACCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCCAAAGGTGTTCTCTTTTATGGACCTCCTGGCTGTGGTAAAACCCTGCTTGCAAAAGCAATTGCTAATGAATGCCAGGCTAACTTCATAAGTGTTAAGGGACCTGAGTTGCTGACAATGTGGTTTGGTGAGAGTGAAGCAAACGTTCGCGAGATATTGATAAGGCCCGGCAATCGGCTCCATGCGTGCTTTTCTTTGATGAACTTGACTCTATTGCAACCCAGTTCTGTAGGTGATGCTGGTGGTGCTGCAGATAGAGTGTTGAACCAACTATTAACAGAAATGGATGGTATGACAGCTAAGAAAACAGTTTTCATCATCGGGGCAACAAACAGACCAGACATTATAGACCCTGCATTGCTCAGGCCTGGACGTTTGGACCAACTGATTTACATCCCTTTACCAGATGATGAAACTTCACGTCTTCAAATCTTCAAGGCATGCTTGAGGAAGTCACCAATCTCCAAGGATGTTGACCTGGCAGCTCTTGCCCGTTTTACTCATGGATTTAGTGGTGCAGACATCACAGAAATTTGCCAACGTGCTTGCAAATATGCCATTAGAGAAGACATTGAGAAGGGTATTGAGAAGGAGAGAAGAAAAAGAGAGAACCCTGAAGCCATGGAAGAAGATGAGATTGAAGATGTGGCTGAGATAAAACCAGCCCACTTTGAGGAGTCTATGAAGTTTGCTCGGCGGAGTGTGAGTGATGCTGACATCAGGAAATACCAACTCTTTGCTCAGACCTTGCAACAGTCTCGTGGTATTGGATCGGAGTTTCGGTTTCCAGATCGAACTGAGAACACTACAACAGGAGCTGCTTCAGACCCCTTCTCATCTGTTACAGCTGAGGGAGATGATGATCTGTACAGTTAA 1824 0.4446 MSHSYKAKLPTYFSSHSSLDHTTPLQTPLQKEPSSSKSPHKAMADPTSSNPDKDQSSSDPGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALSSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREILIRPGNRLHACFSLMNLTLLQPSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDDETSRLQIFKACLRKSPISKDVDLAALARFTHGFSGADITEICQRACKYAIREDIEKGIEKERRKRENPEAMEEDEIEDVAEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRTENTTTGAASDPFSSVTAEGDDDLYS 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi869g00004 607 Gene3D - 178 269 - -
Sebi869g00004 607 MobiDBLite consensus disorder prediction 573 607 - -
Sebi869g00004 607 ProSitePatterns AAA-protein family signature. 420 438 IPR003960 GO:0005524|GO:0016887
Sebi869g00004 607 SUPERFAMILY Cdc48 domain 2-like 60 104 IPR029067 -
Sebi869g00004 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 268 IPR027417 -
Sebi869g00004 607 Gene3D - 270 450 IPR027417 -
Sebi869g00004 607 Gene3D - 110 177 IPR027417 -
Sebi869g00004 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 564 IPR027417 -
Sebi869g00004 607 Gene3D - 455 563 - -
Sebi869g00004 607 PANTHER AAA-FAMILY ATPASE 206 569 - -
Sebi869g00004 607 Pfam ATPase family associated with various cellular activities (AAA) 320 450 IPR003959 GO:0005524|GO:0016887
Sebi869g00004 607 Pfam ATPase family associated with various cellular activities (AAA) 113 176 IPR003959 GO:0005524|GO:0016887
Sebi869g00004 607 MobiDBLite consensus disorder prediction 1 63 - -
Sebi869g00004 607 SMART AAA_5 316 452 IPR003593 GO:0016887
Sebi869g00004 607 FunFam Bromodomain protein 138 177 - -
Sebi869g00004 607 MobiDBLite consensus disorder prediction 579 594 - -
Sebi869g00004 607 FunFam Cell division control 48 277 450 - -
Sebi869g00004 607 FunFam Cell division control 48 178 269 - -
Sebi869g00004 607 ProSitePatterns AAA-protein family signature. 147 165 IPR003960 GO:0005524|GO:0016887
Sebi869g00004 607 MobiDBLite consensus disorder prediction 1 62 - -
Sebi869g00004 607 Pfam AAA+ lid domain 473 514 IPR041569 -
Sebi869g00004 607 Pfam AAA+ lid domain 199 241 IPR041569 -
Sebi869g00004 607 Gene3D - 47 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi869g00004 Sebi-Chr869 49333 53920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi869g00004 312 509 Calmodulin-binding Proteins AT3G56690 38.693 2.71e-34 137