Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi869g00003 ATGGAAAAGAACCAGCCGGTTGTGCTCACTGGACTAATGGACCATCATTGGAGGGCTTGCAATGACTGGGTCACCCCTCATGGACAACCCAATCTTCAATTTTTCTCAACTCATTTTGGGGCCTCTAAAGTTCAGGTTGCAGATTGTGATACCAGAGATTTCACTGATCAAAAAAGAGAGGAGATGATGGTCTCGGATTTCATAGGATGTTGCCTTCAACAAGTTAAGGGTTCTGCAGTTCAGTGTAATAATGAAAATCATACAAGTAATGGTCACTCTGTATCTGTACCGTATTTGAAGGATTGGCATTTTGTGAAGATTCTGACACTTACAAGCAAAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTACATGGGAGTGAAAGGTGTGAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGTCTCTGACTCAAAATATCCTGGTTTTAAAAGGGCTATCTGGTTAGAATGCACACAAGAAGCGGGTGAAATCATATTTGTTCCTAGTGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAAGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTTGACTTCTTTACTTTCATGTCATACTTCACCTTGGCCAACTTGGAAGATTGCATCAGATATGAAACACATGCATGCTCTGGAAGGAAATCAAGATTGCGCTGTGGATATAATCAAAGCATTTAAAGATCCAAGGTTTTCCCAATTGTGCATGCATGTGGGAAGAACATATTTAACAATACATGAGCAATCTAATTTGTTCTCTGACTTTGAGAGCTCTTCAACGGTTAATTTGGTGGACCTCAATGTTTTGAAAGCATACACTTCTTCTCAGGTCTACACACCTGAAGATCTCATTAATTTCATAGACAATGCTGTTACAGAACTAGGTGACTGTTACATTGAGTCATCTGTACTACATGTTGCTTGA 1104 0.3931 MEKNQPVVLTGLMDHHWRACNDWVTPHGQPNLQFFSTHFGASKVQVADCDTRDFTDQKREEMMVSDFIGCCLQQVKGSAVQCNNENHTSNGHSVSVPYLKDWHFVKILTLTSKMRKYVALTIDLLHGSERCEDLGLLFMLMFSGPIAVSDSKYPGFKRAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLKDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFLTSLLSCHTSPWPTWKIASDMKHMHALEGNQDCAVDIIKAFKDPRFSQLCMHVGRTYLTIHEQSNLFSDFESSSTVNLVDLNVLKAYTSSQVYTPEDLINFIDNAVTELGDCYIESSVLHVA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi869g00003 367 Pfam Cupin-like domain 147 195 IPR041667 -
Sebi869g00003 367 Gene3D Cupin 140 196 - -
Sebi869g00003 367 Gene3D Cupin 1 139 - -
Sebi869g00003 367 ProSiteProfiles JmjC domain profile. 1 212 IPR003347 -
Sebi869g00003 367 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 2 110 - -
Sebi869g00003 367 SUPERFAMILY Clavaminate synthase-like 2 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi869g00003 Sebi-Chr869 43919 47963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi869g00003 162 204 Glycosyltransferase AT1G78280 46.512 1.02e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi869g00003 Cupin_8 3.3e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi869g00003 - - gsj:114409851 336.265