Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi868g00007 ATGCCTGTCATACTGGATTCTCTTAGTTCAGTGGGTTGCATTGAAGAATCTGTTATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAATTGCAAGTTGCGCGAAGCTTTCCCAGATAATGACATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTTGATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTGGAGGCAACAAATGCTCATCTTGGAACTCAATTCTCCTTGGACAGTACTTGGCAGAAAGAATGGCCATCAGATGATCCAGAAGATGATGACTATAATCCAGAGAGAAAAGAAGACAGCCATAGCATCAAGACAGAAGGAACTGACAATAGTGTATCTGATGATTTAAGCAGTTCTTCCAATTTGTGTTCTTTGAATGGTGATGAAGGCATCAGCCTTGAATATTATTCTGTTAATAGCTGCATAGATTCTGATGAGTCTGGGGAAATAGCATGTGGCCGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTCAATGTGAACAAGTGAGTGAAGATGAGGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTTATGACTCTACATGAAAGTGAGAATAAATATCCCAATAATGAGAACAGTGGTAGAATAAAAGAGGGTTCTTCAGGCATAAGAATAAGAAGACCTTGTTTCAGGATTCCACATGACGCAGTTGAGAAGCTACGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAGATCTGTGAGGGAAAGTCTGTCAAAAGAGCTGGGACTTGATTCTGTGAAGTGTCAAGCAGAAGGGGGACAACAGCTTCAGAGTCTCACTTCTAAGACTTCAAAGGATTCTGGATCACAAAATGTGGAGAAAGATGAGCTTTTGAAATCAAGGCCTCGAAAATTACCGACTCCATGGAGGTCAGTGGGTGGTGATGTTAGCTTGAAGAAACTGTTGAAAGAAAGAAAAGGAGGGTAA 1098 0.4107 MPVILDSLSSVGCIEESVIAPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQKEWPSDDPEDDDYNPERKEDSHSIKTEGTDNSVSDDLSSSSNLCSLNGDEGISLEYYSVNSCIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPQCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKYPNNENSGRIKEGSSGIRIRRPCFRIPHDAVEKLRQVFAENELPPRSVRESLSKELGLDSVKCQAEGGQQLQSLTSKTSKDSGSQNVEKDELLKSRPRKLPTPWRSVGGDVSLKKLLKERKGG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi868g00007 365 FunFam pathogenesis-related homeodomain protein-like 23 83 - -
Sebi868g00007 365 MobiDBLite consensus disorder prediction 309 324 - -
Sebi868g00007 365 MobiDBLite consensus disorder prediction 325 340 - -
Sebi868g00007 365 SMART PHD_3 31 84 IPR001965 -
Sebi868g00007 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 80 IPR013083 -
Sebi868g00007 365 ProSitePatterns Zinc finger PHD-type signature. 32 83 IPR019786 -
Sebi868g00007 365 ProSiteProfiles Zinc finger PHD-type profile. 29 86 IPR019787 -
Sebi868g00007 365 MobiDBLite consensus disorder prediction 106 147 - -
Sebi868g00007 365 CDD PHD_PRHA_like 31 83 IPR045876 -
Sebi868g00007 365 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 5 302 - -
Sebi868g00007 365 Pfam PHD-finger 31 86 IPR019787 -
Sebi868g00007 365 MobiDBLite consensus disorder prediction 206 226 - -
Sebi868g00007 365 SUPERFAMILY FYVE/PHD zinc finger 23 88 IPR011011 -
Sebi868g00007 365 MobiDBLite consensus disorder prediction 309 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi868g00007 Sebi-Chr868 84857 88188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi868g00007 5 305 Homeobox Transcription Factor Family AT4G29940 48.703 3.41e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi868g00007 PHD 2.1e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi868g00007 - - vum:124821518 551.206