Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi868g00004 ATGACGGAGCAGACCAAGGTCAGCGTGCTGTGCAGCCTGTTCACGTGGACGCAGAGAAGCAAGTCGCCGGCGAAGAAGCGGTCCAAGTTCCGCAAGTTCCTCGATTCCTTCTGCAAAGACGGCAACTACTTCCCCGCCATTCGCCTCATTCTCCCTAACCTCGATCGCGAGCGAGGCTCCTATGGCCTCAAGGAATCCGTTCTCGCCACTTCCCTCATCGACGCTCTCGGCATGTCTAGGGACTCTCACGACGCCCTTCGCCTCATCAATTGGCGCAAAGGCGGTGCCAAAACCGGTGTCAATGCCGGTAATTTTGCCCTTGTCGCCACCGAGGTGCTGCAGAGTAGACAAGGGACGGCTTCGGGTGGGTTGACAATAAAGGAGTTGAATGACTTGCTTGATCAGTTGTCTTCGAGTGAAAACAGGGCTGAGAAGACTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCGCAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTGAAGCTGGGAATCAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACATGTGACTTAAAATTAGTTTGTGAAAAGCTAAGGGATCGGAATCAACGTCACAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAATTAGCTAAAAGAATTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAATGCAAATTCGATGGTGATCGCATTCAAATTCATAAGAATGGAAAAGAGATACATTTCTTCTCAAGGAACTTTCTTGATCATTCTGAATATGCACCTGCGATGTCAGAAATTATAATACAAAACATTCTTGTAGATAGGTGCATACTTGATGGTGAAATGTTGGTCTGGGACACATCATTGAATCGTTTTGCTGATTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGATAGTGATAGACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACATTGAAGGAACGACATGAGATTCTCCATAAAGTTGTGAGGCCAGTAAAGGGTCATTTGGAGATTTTAGTACCTAATGGTGGTATCAACAGTCACCGTTCTTCTGGCGAACCATGTTGGTCATTTATTGCTCATAATGTGGATGAAGTTGAGAAGTTTTTCAAAGAAACCATTGAAAACAGAGATGAGGGAATTGTTTTAAAAGACCTTGGTTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCCGAATACATTCAAGCTGGCTCTGATCTTGATGTACTTATCATAGGTGGATACTATGGTTCTGGACGACGTGGAGGAGAGGTTGCTCAGTTCTTGGTGGGCCTTGCAGAACGTCCTTCCCCAAATACACATCCCAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCTGTTGTAACCAAACTAAAACCTTACTTCAGATCAATTGTTCTCTCTATAACCAGTGATATCCGAACTATAGAATCTGATGTCTTTTCTGCACCTTACAGCCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAGGCTTGGTACGAATGCCTTGATGTGCAATCATTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAGCAGGACAGTAAACCAAAACGCATGAAATCCTCCATAAGGGGAGAAAAGAAAGACATGTCCATTGTTCCTTCTCATTTAATTCAAACTGATGTTTCCAGTGTTAAGGGAGGTTCCTTAATATTTTCAAATATGATGTTTTACTTTGTTAATGTTCCTACATCTCATTCCCTCGAGTCCATGCACAAAATAATTGCTGAGAATGGGGGAACTTTCTCGATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTTGAAGCAGCAAAACTTCACGGTGATATCATTCATTACACTTGGGTATTAGATTGCTGTGCACAAAAGAAGCTTGTCCGCTTACAGCCCAAGTACTTCCTGTTCCTATCTGAACTGACAAAGAAGAAGTTACAAGAAGAAATTGATGAGTTCTCAGACTCTTACTACTTGGATCTTGATCTTGTAGACATCAAACAGCTCTTAAGCAATATTCATAGGTCAGAAGATGTCAGCACTGTTAATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTCCTTTAATGGATGCTCCATCTATTTCCACACTGTAATGCCATCATTGAAAGAAGATTGGGAATTTCTTTTGGGACTTGCTTTGAGGAGATTCAAGCTTGAAGTTCTAATGGGTGGTGGAAAAGTTACCTCTAATCTTAGTTGTGCAACTCATTTAGTGGCCTTGTTTGTGCCAAGATGTCATACCAACTTTGAAGAAGAAATACAGAGTAGTTTCACTTCAGTAGAGAGAAAAATTCTCCGAAGCAAGAGATTGCATATGGTTAAATCCCAGTGGTTAGAAGATTGTTTGAACAATAACCAAAGATTACCAGAATACCCCTATAGCATGAAGCCCTGTGGAATAGAAGAGTCAACTGCTGAAGATTGTGAACTTGACCTGGCGTTAGAGACTCATTTGGTTGGAGACAATGTAGAAGACCAAAATATATCCCTCTCTGACAAGGGAAGTAAACAGAGAAATGCAGAAGCTGTTTATGAAGACAGTTTGGCTTTGGTGTCCCAAGAGAAGGGTGGCCAAAGGAAAAGAGGAAGGCCTGCAGGAGGCAGAGGTATCAAAAAAGTAAAAACATCTGGCAACCAAGCTCGAAGAGCACGATCACAAATTGTGAAAAAGCGTGCTAAAATATGTGAATATGAATCTGATGAAGGTGATTCTTGTGACAAAAGACCAGATGAGCCAGAGACTGACACTAGAGAAGGAAGTCTTGATTTTTACAAGAAACATTCAGAACCCAAGGAGACTGAGAACCGTGAAAATGTTCATGTTACTGAAACAGAAGAAAGTTCTGAACAAAACAAGAAAGTCAAGAAAGAGGATTTGAAGGACAGTGAACATGAAAGAATGTTGGTTCCCGAAATTGAAATGACTGATAGGCACAATTACCAAAACAGTCAGGTGACGGAGAAACTTGAAATTTTGGCTGATCCTGTGCAGGCGATGTTATTTGACATGATTCCTAGCCTTGCCACGAAGAAAGTTGAACAACCTATGAATTGTAATGTTGCAGAAGAGAAGCTACCAGAAATCTCCAATGCAGAAGAGAAGCTACCAGAAATCTCCAATGCAGAGCCTAGTCAGCCTGTAATTACAAAGAAAAAGAAAGTTAGCTACAAGGATGTTGCTGGCAAACTGCTAAAGGATTGGTAG 3453 0.417 MTEQTKVSVLCSLFTWTQRSKSPAKKRSKFRKFLDSFCKDGNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRDSHDALRLINWRKGGAKTGVNAGNFALVATEVLQSRQGTASGGLTIKELNDLLDQLSSSENRAEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRIANATEAWKKLHGKEVVVECKFDGDRIQIHKNGKEIHFFSRNFLDHSEYAPAMSEIIIQNILVDRCILDGEMLVWDTSLNRFADFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHEILHKVVRPVKGHLEILVPNGGINSHRSSGEPCWSFIAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDAVVTKLKPYFRSIVLSITSDIRTIESDVFSAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRMKSSIRGEKKDMSIVPSHLIQTDVSSVKGGSLIFSNMMFYFVNVPTSHSLESMHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKLHGDIIHYTWVLDCCAQKKLVRLQPKYFLFLSELTKKKLQEEIDEFSDSYYLDLDLVDIKQLLSNIHRSEDVSTVNHYRKKYCPKDKWSSFNGCSIYFHTVMPSLKEDWEFLLGLALRRFKLEVLMGGGKVTSNLSCATHLVALFVPRCHTNFEEEIQSSFTSVERKILRSKRLHMVKSQWLEDCLNNNQRLPEYPYSMKPCGIEESTAEDCELDLALETHLVGDNVEDQNISLSDKGSKQRNAEAVYEDSLALVSQEKGGQRKRGRPAGGRGIKKVKTSGNQARRARSQIVKKRAKICEYESDEGDSCDKRPDEPETDTREGSLDFYKKHSEPKETENRENVHVTETEESSEQNKKVKKEDLKDSEHERMLVPEIEMTDRHNYQNSQVTEKLEILADPVQAMLFDMIPSLATKKVEQPMNCNVAEEKLPEISNAEEKLPEISNAEPSQPVITKKKKVSYKDVAGKLLKDW 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi868g00004 1150 ProSiteProfiles BRCT domain profile. 619 707 IPR001357 -
Sebi868g00004 1150 MobiDBLite consensus disorder prediction 972 1046 - -
Sebi868g00004 1150 NCBIfam ATP-dependent DNA ligase 61 564 IPR000977 GO:0003910|GO:0005524|GO:0071897
Sebi868g00004 1150 MobiDBLite consensus disorder prediction 573 597 - -
Sebi868g00004 1150 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Sebi868g00004 1150 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Sebi868g00004 1150 Pfam BRCT domain, a BRCA1 C-terminus domain 621 704 IPR001357 -
Sebi868g00004 1150 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Sebi868g00004 1150 CDD BRCT_DNA_ligase_IV_rpt1 623 709 - -
Sebi868g00004 1150 Gene3D BRCT domain 633 747 IPR036420 -
Sebi868g00004 1150 ProSiteProfiles BRCT domain profile. 807 878 IPR001357 -
Sebi868g00004 1150 MobiDBLite consensus disorder prediction 580 597 - -
Sebi868g00004 1150 SUPERFAMILY Nucleic acid-binding proteins 449 568 IPR012340 -
Sebi868g00004 1150 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi868g00004 1150 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 102 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi868g00004 1150 SMART BRCT_7 782 868 IPR001357 -
Sebi868g00004 1150 SMART BRCT_7 621 697 IPR001357 -
Sebi868g00004 1150 SUPERFAMILY BRCT domain 623 708 IPR036420 -
Sebi868g00004 1150 Coils Coil 1147 1150 - -
Sebi868g00004 1150 Gene3D BRCT domain 766 878 IPR036420 -
Sebi868g00004 1150 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Sebi868g00004 1150 MobiDBLite consensus disorder prediction 934 1046 - -
Sebi868g00004 1150 FunFam DNA ligase 634 748 - -
Sebi868g00004 1150 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Sebi868g00004 1150 FunFam DNA ligase 1 218 - -
Sebi868g00004 1150 Pfam DNA ligase N terminus 8 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi868g00004 1150 SUPERFAMILY BRCT domain 762 880 IPR036420 -
Sebi868g00004 1150 Gene3D - 444 517 IPR012340 -
Sebi868g00004 1150 Gene3D - 518 573 IPR012340 -
Sebi868g00004 1150 PANTHER DNA LIGASE 4 3 517 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Sebi868g00004 1150 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Sebi868g00004 1150 FunFam DNA ligase 220 443 - -
Sebi868g00004 1150 Coils Coil 126 146 - -
Sebi868g00004 1150 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi868g00004 214 569 Core DNA Replication Machinery Family AT1G08130 26.515 1.02e-28 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi868g00004 K10777 - gmx:100816002 1912.89