Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi862g00004 ATGAACCTACCGGTTCCTCCAAAACCGAACGAGTCACCACCAACGGTTCAACTCAGTTTCGAAGCCGAGTCAGCTTCATCTCCTTCATCTTCTTCTTTTGAAGACAACAAATCTCTTTCCCTTTCCTATGGTCTCAGGGAGAATCCAAAGAAGAGTTTTCGATTTGCCGATCCTGAATTCTCGTTCGCCGGCGCGGCGGACGCCGGGTCAGTGATCCTCCAAGACAGAGAGAGCGAGACCGAGTCATCGAAGAATCCGACTCGGAGACGATCCAAACGGACTCGGACGAACCCGTGCGGCGAGAATAACAAGAACGAGTCAGCGAGTTCTGCATCGGACACAACCACGGAGGAAGACCTCGCGTTCTGTCTCATGTTGTTGTCTCGTGACAAGTGGAAGAGACAACCGAGTCACAAGAAGATCAAGGTAGTGGAAGAATCTGAATCTGAGCATAAGAATAATAATGGTGGAGCTTCTTCTGCTACTCCTGTGGTGATAGTTGCTGAGAAGAAAATTCATGAGTGTCCTGTTTGCTTCAGGGTATTTGCTTCAGGTCAAGCTCTTGGTGGACACAAGAGAACCCATGTTATAGGGTCAGCAACAGTAACAGCACCAGCAATAATCAATGAGGTTCGAAGTTCACCAAAGGTTGGTGATAGTTTGATAGATCTCAATTTACCTGCTCCTATGGATGATGATGATGTCGAGGACTCTGCTGTTTCGGATGCAGAATTTGTCAAACCAATTAGGCACTGA 756 0.4762 MNLPVPPKPNESPPTVQLSFEAESASSPSSSSFEDNKSLSLSYGLRENPKKSFRFADPEFSFAGAADAGSVILQDRESETESSKNPTRRRSKRTRTNPCGENNKNESASSASDTTTEEDLAFCLMLLSRDKWKRQPSHKKIKVVEESESEHKNNNGGASSATPVVIVAEKKIHECPVCFRVFASGQALGGHKRTHVIGSATVTAPAIINEVRSSPKVGDSLIDLNLPAPMDDDDVEDSAVSDAEFVKPIRH 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi862g00004 251 SUPERFAMILY beta-beta-alpha zinc fingers 169 196 IPR036236 -
Sebi862g00004 251 Pfam C2H2-type zinc finger 173 195 - -
Sebi862g00004 251 MobiDBLite consensus disorder prediction 14 38 - -
Sebi862g00004 251 MobiDBLite consensus disorder prediction 1 38 - -
Sebi862g00004 251 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 7 151 IPR044303 GO:0006355
Sebi862g00004 251 MobiDBLite consensus disorder prediction 66 113 - -
Sebi862g00004 251 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Sebi862g00004 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 195 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi862g00004 Sebi-Chr862 56753 57694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi862g00004 56 235 C2H2 Transcription Factor Family AT3G60580 41.494 5.51e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi862g00004 - - aprc:113850450 208.379