Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi862g00003 ATGAGGGCACATGGCATAGGTGATGAATCAGGGCACATGGATGATGATGACCCTGCAAGTGATTGGGAAGAAAGGCTAGGTGGTAATGTTCCACCAAGCAACAAACGCATGTATGCTCTAAGAACAAACCCAAATAGGCTAAAGAGCTGTAGGGTATGTGAGAATTGTGGTAAAGAGTTCTTATCTTGGAAATCCTTCCTTGAGCATGGAAAATGCACTTCTGAAGATGCAGAGTCCCTTTCCCTTGTCTCTTCTCCTGGCTCCGACGCCGTCGCCGATGACGTCGGCCGGCGAGGTTGCGGTGGTTGGTCCAAAAGGAAAAGATCTTTGAGAACAAAAGTTGGAAGCTTTAACTATAATTGTCCTTCAAGCGAGGAAGAAGACTTAGCTAATTGTTTGATGATGTTGTCCAATGCCATTGTTGATCCTCTTGTGGCAGAGCCTGAAGAATCATGTGCCTCAGCTAGCAAAGATGAAGAAAGAAGAAACCCCATGAACTTCATTGCACCATTATCATACAGAGCCCCCATTGATCATAATAACAACAACAACAATAAGGCTAAAGGGGTAGCAAGCAAAGGCTTATTTGAATGTAAAGCATGCAAGAAAGTCTTCAACTCACACCAAGCATTAGGTGGTCACAGAGCAAGTCACAAGAAAGTTAAGGGCTGTTTTGCTGCAAGATTAGACAACATTGATGATAGTCTTGTAGAGGATGATGTCATAACACATGAAGAATTCTTCCCTACAAAATCAAATTCTACATTCCAATTTGATCATGGCTCTTCCAACCCCACATTGGGTTCTTCCTCAAAGAGAAAATCCAAGGTTCATGAATGCTCAATTTGTCATAGGAGTTTCTCTTCAGGACAAGCATTGGGAGGACACAAGAGGTGCCATTGGATTACATCAAATGCACCAGACACATCAACATTGGCAAGGTTTCAACAATTTCATCATCAAGAACACATGGAACAAATACCAAAGTTTGATGCATCCTCTGAGACAATTGATCTCAAACTAGACCTTAACCTCCCTGCTCCTACCAACAATGAACTTGCAAGAAGGAATAATAATGTGTCCACGGAAATTTACTTGCAGCCATGGGTTGCAACAAAGGAAATCAAAGAGGATAATAACAATAGTCAATGTCAGAGTCATCAGCATGTTAACCAAGTTGACAATGAAAATGATGAGGAAAAAAACAATAACACTTTGATGCAAAATGTGGATAATGAAGCTGATAGTAAGATCAAGTTGGCAAAATTAAGTGAGCTAAAGGACATGAACATGGGTGGAACTTCTTCACCATGGTTGCAGGTGGGAATCGGTTCAACAACCGATGTGGGGACTGATACATAA 1362 0.4156 MRAHGIGDESGHMDDDDPASDWEERLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLSLVSSPGSDAVADDVGRRGCGGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESCASASKDEERRNPMNFIAPLSYRAPIDHNNNNNNKAKGVASKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNIDDSLVEDDVITHEEFFPTKSNSTFQFDHGSSNPTLGSSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFHHQEHMEQIPKFDASSETIDLKLDLNLPAPTNNELARRNNNVSTEIYLQPWVATKEIKEDNNNSQCQSHQHVNQVDNENDEEKNNNTLMQNVDNEADSKIKLAKLSELKDMNMGGTSSPWLQVGIGSTTDVGTDT 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi862g00003 453 MobiDBLite consensus disorder prediction 1 37 - -
Sebi862g00003 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 223 IPR013087 -
Sebi862g00003 453 MobiDBLite consensus disorder prediction 253 271 - -
Sebi862g00003 453 SUPERFAMILY beta-beta-alpha zinc fingers 195 300 IPR036236 -
Sebi862g00003 453 PANTHER OS02G0659100 PROTEIN 1 450 - -
Sebi862g00003 453 ProSitePatterns Zinc finger C2H2 type domain signature. 280 300 IPR013087 -
Sebi862g00003 453 MobiDBLite consensus disorder prediction 253 272 - -
Sebi862g00003 453 SMART c2h2final6 196 218 IPR013087 -
Sebi862g00003 453 SMART c2h2final6 278 300 IPR013087 -
Sebi862g00003 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 300 IPR013087 -
Sebi862g00003 453 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Sebi862g00003 453 MobiDBLite consensus disorder prediction 1 23 - -
Sebi862g00003 453 Pfam C2H2-type zinc finger 196 220 - -
Sebi862g00003 453 Pfam C2H2-type zinc finger 277 302 - -
Sebi862g00003 453 Gene3D Classic Zinc Finger 193 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi862g00003 Sebi-Chr862 36668 38029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi862g00003 93 345 C2H2 Transcription Factor Family AT1G02040 35.039 1.01e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi862g00003 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi862g00003 - - gmx:100793846 740.725