Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi861g00022 ATGGACAACAATGATGACAAAATCATATTAGGCACACATGCGAGTCACCTTGTTATCTGTGCTGTTGCCACAATCTGTTTCGTTCTAGCAACAGTAGCATGCTATATCATTCTCTTCAGGTATTTCTATAGGTCTCCAAGAGTATTGCAACAGAGGAACAACAAGAGTGGTGGTGTGAAAGAGGAAATCCTCAACAAGATCCCAACTCTCCCATTCTCAACCCAAAAAATTGATGTCTTTCGTTTGGAACAAAATGAATGCTCCATTTGCCTTGGTGAATTGGAGGATGGAGAGCCAGTGAGGTTGTTACCTGCTTGTAAACATGCCTTCCACCCTTTTTGCATTGAATCATGGTTCATTGAACATGCAAATTGTCCTGTTTGTCGTTCACCGATTACTTGTGATTGTGAATTAAGGCTTCCAATAGATTTAGAAAATGATCATGGTGGTGGAGAACAGAGGATCTCGTCAAATGATGATCATCATCATCGGTTAATGAATGGTGATGTGAGTGATTCCATTTCCACCTCCTCAAGATTTCAACGGCCACACCGTTTATTGCTTCACTCTGTCTCTTTCTCATCATCACGCATTCAGCAAAAGCCACGAGCTCTGGATATTTGGTTGAACAGGGATTATACTGAATGGACTTTCTCAGCTCTCCTCTTTAATTATTGA 678 0.41 MDNNDDKIILGTHASHLVICAVATICFVLATVACYIILFRYFYRSPRVLQQRNNKSGGVKEEILNKIPTLPFSTQKIDVFRLEQNECSICLGELEDGEPVRLLPACKHAFHPFCIESWFIEHANCPVCRSPITCDCELRLPIDLENDHGGGEQRISSNDDHHHRLMNGDVSDSISTSSRFQRPHRLLLHSVSFSSSRIQQKPRALDIWLNRDYTEWTFSALLFNY 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi861g00022 225 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Sebi861g00022 225 SUPERFAMILY RING/U-box 79 135 - -
Sebi861g00022 225 SMART ring_2 87 128 IPR001841 -
Sebi861g00022 225 Pfam Ring finger domain 85 129 IPR001841 -
Sebi861g00022 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 134 IPR013083 -
Sebi861g00022 225 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Sebi861g00022 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi861g00022 Sebi-Chr861 272568 273666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi861g00022 15 132 C3H Transcription Factor Family AT3G10910 31.061 3.28e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi861g00022 - - aprc:113863869 192.586