Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi861g00014 ATGGCGGTTTCTCCGTCGGTCGCCGCCACTCCGGCGTCTCTTTACGTTGGCGACCTCCATCCCGATGTCTCCGACGGCCAGCTGCATGACATGTTCTCGGAGTTCAAGAGCCTCGCATCCGTTCGCATTTGCAGGGATTCCTCCACTGGCAGGTCACTCTGTTATGGCTATGTCAACTTCCTTTCTCCCCAAGACGCAACTCGTGCAATCGAGTTGAAGAATCATTCGATGCTGAATGGAAAAGTGGTAAGGGTCATGTGGTCACGTCGTGATCCAGATGTAAGGAAAAGCAGCATTGGGAACTTGTTTGTTAAGAACTTAGCCGAATCAATAGATAATGCTGGACTACAAGATATATTTAAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTCATGTCTGAGGATGGGAAGAGCAAAGGATACGGCTTTGTTCAGTTTGAATCAGAGGAGTCTGCAAATACTGCTATCGAGAAGCTGAATGGCTCTACTATCAATGATAAGCAGATATATGTTGGGAAATTTGTCAAAAAAAGTGACCGCATTTTGCCTGGCCCTGATGCCAGATATACAAATTTGTACATGAAGAATTTGGACCCAGATATTACAGAAGCAACCCTGCAGGAAAAGTTTTCCTCTTTCGGCAAAATTGTTAGTTTGGCCATTGCAAAGGACGACAATGGGATGTCAAAGGGTTTTGGCTTCGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAGTGGATCACAACTTGGTTCAAAGACTCTGTATGTAGCCAGGGCACAAAAGAAGGCTGAGCGCGAGCAGATCTTGCTCCATCAATTTGAGGAGAAACGAAAGGAACAAATCTTGAAATATAAGGGATCAAACATTTATGTGAAGAACATTGATGATAATGTTAGTGATGAAGAACTGAGAAATCATTTTAGTGCATGCGGCACTATAACTTCTGCAAAAGTTATGCGAGATGGCAAAGGGATAAGCAAAGGATTTGGTTTTGTCTGCTTCACCACTCCTGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGTAAGAAGGAGGACAGGCAAGCACAGTTACAGCTTCAATACGCACAGCAAATAGCAGGACTACCTGGACCTTCAACTGCCATTATCCCTGGTGGATATCCTCCATACTACTATGCAACTTCTGGTGTTGTTTCACATCTGCCACCCCGAGCTGGGCTTATGTATCAACCTCTAGCAGTGAGGCCAGGATGGAGGGCTAATGGCTTTGCACCTCCGGCTAGATCATTTCAACAATCACCTGTGCCTGCTGTTTCTAACAGTACTAAGCAGCATAGACAAAACAGGGGCAGGATGAATGGGCATGCAATATCACAGGGAAGTACTCACTCTGGTACTTATATGCCACAGGTCCAGCAGGCTTCTCAGTCTGTCGTCTCTTCAAGAGAGTCAAATAATCAGCAGAGAACCGGACAGGCTAAGTATGTACCTAGTGGACGCCAACGTGAGATGGAAAAAGGATCTGGATTCTCATCTGGTGGTCCAAACTCTGGTGGAGGGTCCCAGGGATCAGAAGTGCTGCATAACATGCTTGCTGCTGCTCCTCCTGAGCAGCAGAAAGAGATACTTGGCGAGCATCTATTCATGCTTGTCCACAAATTCAAGCCTAACCTAGCAGCAAAGATTACTGGGATGCTTTTGGAGATGGACAATGCAGAATTGCTTGTTCTCCTGGAATCACCAGAGTCTCTTTCAGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGAGGTTATGCATTCAAATTACCTTTCAGCTGAGGTTGCAGTGAACTGA 1866 0.4539 MAVSPSVAATPASLYVGDLHPDVSDGQLHDMFSEFKSLASVRICRDSSTGRSLCYGYVNFLSPQDATRAIELKNHSMLNGKVVRVMWSRRDPDVRKSSIGNLFVKNLAESIDNAGLQDIFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESANTAIEKLNGSTINDKQIYVGKFVKKSDRILPGPDARYTNLYMKNLDPDITEATLQEKFSSFGKIVSLAIAKDDNGMSKGFGFVNYDNPDDAKKAMEAMSGSQLGSKTLYVARAQKKAEREQILLHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRNHFSACGTITSAKVMRDGKGISKGFGFVCFTTPEEANKAVNTFHGKKEDRQAQLQLQYAQQIAGLPGPSTAIIPGGYPPYYYATSGVVSHLPPRAGLMYQPLAVRPGWRANGFAPPARSFQQSPVPAVSNSTKQHRQNRGRMNGHAISQGSTHSGTYMPQVQQASQSVVSSRESNNQQRTGQAKYVPSGRQREMEKGSGFSSGGPNSGGGSQGSEVLHNMLAAAPPEQQKEILGEHLFMLVHKFKPNLAAKITGMLLEMDNAELLVLLESPESLSAKVEEAVQVLKNSKTKVSGQEVMHSNYLSAEVAVN 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi861g00014 621 Gene3D - 522 616 - -
Sebi861g00014 621 CDD RRM2_I_PABPs 99 174 IPR045305 -
Sebi861g00014 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 372 IPR000504 GO:0003723
Sebi861g00014 621 FunFam Polyadenylate-binding protein 522 608 - -
Sebi861g00014 621 SMART poly_2 536 599 IPR002004 GO:0003723
Sebi861g00014 621 FunFam Polyadenylate-binding protein 4 99 - -
Sebi861g00014 621 PANTHER OS02G0815200 PROTEIN 289 442 - -
Sebi861g00014 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Sebi861g00014 621 FunFam Polyadenylate-binding protein 182 276 - -
Sebi861g00014 621 Coils Coil 263 283 - -
Sebi861g00014 621 Gene3D - 284 374 IPR012677 -
Sebi861g00014 621 SUPERFAMILY RNA-binding domain, RBD 291 371 IPR035979 GO:0003676
Sebi861g00014 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Sebi861g00014 621 SMART rrm1_1 13 86 IPR000504 GO:0003723
Sebi861g00014 621 SMART rrm1_1 295 368 IPR000504 GO:0003723
Sebi861g00014 621 SMART rrm1_1 192 264 IPR000504 GO:0003723
Sebi861g00014 621 SMART rrm1_1 101 173 IPR000504 GO:0003723
Sebi861g00014 621 MobiDBLite consensus disorder prediction 427 496 - -
Sebi861g00014 621 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 597 IPR006515 GO:0003723
Sebi861g00014 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Sebi861g00014 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Sebi861g00014 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 359 IPR000504 GO:0003723
Sebi861g00014 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Sebi861g00014 621 SMART rrm2_1 101 173 IPR003954 GO:0003676
Sebi861g00014 621 SMART rrm2_1 295 371 IPR003954 GO:0003676
Sebi861g00014 621 SMART rrm2_1 192 264 IPR003954 GO:0003676
Sebi861g00014 621 SMART rrm2_1 13 86 IPR003954 GO:0003676
Sebi861g00014 621 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
Sebi861g00014 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Sebi861g00014 621 MobiDBLite consensus disorder prediction 511 525 - -
Sebi861g00014 621 Pfam Poly-adenylate binding protein, unique domain 531 596 IPR002004 GO:0003723
Sebi861g00014 621 SUPERFAMILY RNA-binding domain, RBD 9 93 IPR035979 GO:0003676
Sebi861g00014 621 Gene3D - 4 100 IPR012677 -
Sebi861g00014 621 SUPERFAMILY PABC (PABP) domain 489 607 IPR036053 GO:0003723
Sebi861g00014 621 Gene3D - 181 276 IPR012677 -
Sebi861g00014 621 MobiDBLite consensus disorder prediction 425 525 - -
Sebi861g00014 621 Gene3D - 101 180 IPR012677 -
Sebi861g00014 621 FunFam Polyadenylate-binding protein 101 181 - -
Sebi861g00014 621 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 524 601 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi861g00014 Sebi-Chr861 202224 206543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi861g00014 12 619 Eukaryotic Initiation Factors Gene Family AT2G36660 51.510 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi861g00014 K13126 - gmx:100779547 1022.31