Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi861g00007 ATGTCTTCAATACAACGTTTGGTGGTAGAACCATCACCTTGGCTACCTGGTTCATGTGTTACACAAGACATGCCAGTTAGCAATGGTATTTGGTTAAACCAATCACTCCCTTTCAACATAACTTCATCCAACACAGTGTTCCTCTTCAACTGTTCCCCTCGCCTCTTGGTTTCTCCTCTTAACTGCACTTCTTCAAGTATTTGCCATCATTACTTGGAGAGTTCAGGTCATGTTGACACAAAAAGAGCACTTGAGTGTGCAAGTGATCTTCACCCTTGTTGCACCTTTGTTGCTGGTGGGGTACCTTCAGCTTACAAGATTAGGCTTCACAATTCTGGTTGCAAAGCATTCAGAAGCATCCTTCATTTGGATCAACAGAAACCTGCTAATCAGTGGGAGGAAGGCCTTGAAATTCAATGGACTCCTCCACCTGAACCTGTCTGCAGGACACAAAGGGATTGCTCTGGAGACTCAAAGTGTTCCCCTGCTGTTCTGGCCATCATAACGAAGTCTTGCAAACTCTCTAGCAATAGGGAGAAGAAGCAGGCCAAGGAAAGAGAAGTTGTGCTGAAATCAAGTGCTGGGGAGAAACCTTACAAAATGTTTCAACTGAAAGATGTGAAGAAAGCAACAAATGGTTTTTCTCAAGACAGGATCTTAGGGAGTGGTGGCTTTGGGGAAGTCTACAGAGGTGAATTACAAGATGGAACATTGGTGGCTGTCAAGAAAGCTAAAGTGGGGAACCTGAAAAGCACTCAACAAGTGCTTAATGAGGTTGCAATACTTTCTCAAGTCAATCACAAGAACCTAGTAAGACTCTTGGGCTGTTGTGTTGAATCTGAGCAGCCTTTGATGATCTATGAATATATCTCAAATGGGACCCTCTATGACCATGTTCATGGTAGGTATTCCAACTTTCTAGACTGGAAAACAAGGCTTAAGGTTGCTTTTCAAACAGCTGAAGCATTGGCTTATTTGCATTCTGCTGCACACACCCCCATCTACCATAGAGATGTTAAGTCAACAAATATACTATTGGATGATGAATTCAATGCCAAAGTGTCAGATTTTGGGCTCTCTAGATTGGCTAACCCTGGACTTAGTCATGTGTCAACCTGTGCTCAAGGAACACTGGGGTACTTGGATCCTGAATACTATAGAAACTACCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAGCTTTTGACTTCCCAAAAAGCAATAGACTTCACTCGTGATCAAGATGATGTGAACCTAGCAATTCATGTGAGTCAATATGCTAACAATGGTGCAATCATGGAAGTGGTAGATCAAAGGCTTCTTTCTGTGGAACCCTCATGTGATAAAATGATCACAAGCATAAAACTCTTCTCAGAGCTTGCACTTAACTGTCTAAAGGAGAAGAAAGGTGAAAGGCCTAGTATGAGGGATATTGTTGAAAGCCTCATGTGCATAATTAGGATTGTAAATCAAGAGTGA 1497 0.4202 MSSIQRLVVEPSPWLPGSCVTQDMPVSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSICHHYLESSGHVDTKRALECASDLHPCCTFVAGGVPSAYKIRLHNSGCKAFRSILHLDQQKPANQWEEGLEIQWTPPPEPVCRTQRDCSGDSKCSPAVLAIITKSCKLSSNREKKQAKEREVVLKSSAGEKPYKMFQLKDVKKATNGFSQDRILGSGGFGEVYRGELQDGTLVAVKKAKVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESEQPLMIYEYISNGTLYDHVHGRYSNFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSRLANPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFTRDQDDVNLAIHVSQYANNGAIMEVVDQRLLSVEPSCDKMITSIKLFSELALNCLKEKKGERPSMRDIVESLMCIIRIVNQE 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi861g00007 498 SUPERFAMILY Protein kinase-like (PK-like) 196 489 IPR011009 -
Sebi861g00007 498 Gene3D Phosphorylase Kinase; domain 1 172 289 - -
Sebi861g00007 498 Gene3D Transferase(Phosphotransferase) domain 1 290 497 - -
Sebi861g00007 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Sebi861g00007 498 FunFam Wall-associated receptor kinase-like 20 290 498 - -
Sebi861g00007 498 ProSitePatterns Protein kinases ATP-binding region signature. 220 243 IPR017441 GO:0005524
Sebi861g00007 498 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 33 491 IPR044652 GO:0004672
Sebi861g00007 498 SMART serkin_6 214 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi861g00007 498 Pfam Protein tyrosine and serine/threonine kinase 216 488 IPR001245 GO:0004672|GO:0006468
Sebi861g00007 498 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 186 289 - -
Sebi861g00007 498 CDD STKc_IRAK 220 489 - -
Sebi861g00007 498 ProSiteProfiles Protein kinase domain profile. 214 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi861g00007 Sebi-Chr861 60732 62378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi861g00007 2 498 Receptor kinase-like Gene Family AT5G02070 42.683 1.78e-147 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi861g00007 PK_Tyr_Ser-Thr 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi861g00007 - - gmx:100804678 862.448