Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00128 ATGGCAGATCTTGTTAGCTACAGGAATGCCGACCGTGACATCGAGCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAGCTGCTTAAATATGGTCGTAAGGGAAAGCCTAAGTTTTGTTCATTTAGACTTTCCAATATTTCTGTAAGTGGGCCTCACAAGGCACCATTCCAATCTTCTATAGGACTGAAGTTTGTCATACCACATTTGTGTTGTGTTTCCATATCCTTAATTTCACTAGCTAGGAGCTATGAAACCCAAATGCCTAATACAGTACAGGCTGTTTTCCAACGATATCTGCGTCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTATAACCACGGGAAGCGATCTCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTCAAGGCATTGATATCTTCTGGTCAAGGTGGGCGGTCAAAAATTGATGGATGGAGTGATGGAGGCCTATATCTTGATGATAGTAGAGACTTGACATCAAGTAGTCCTAGTGAAAGTTCAGTTAGTGTTTCACAGGACATCAGTTCTCCTGACATTTCTCTTAGTGTGCCAAATACTTCTCCAAAGTCCTTTCAGCCTGAGAATACCTTAAATTTTGAACGCTCACATGCTCCATCAAACCCATCAAATATGCAAGTGAAAGGATCTGGTTCAGATGTTTTTCGTGTTAGTGTTTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCGGATGATTATGATGCTCTTGGTGACGTATACATTTGGGGGGAGGTCATCTGTGAGAATGTTGTGAAAGTTGGTGCTGAGAAAAATGTCAGTTATCTCAGCCCAAGGGCAGATATTCTCCTCCCCAGGCCACTGGAGTCCAATGTGGTCTTAGATGTACTTCAAATAGCATGCGGTGTAAAACATGCTGCTCTAGTTACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCTGGTGGGCGTCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAGGCACTGTCTTCTACAACCGTTGATTTTGTTGCCTGTGGGGAGTTTCATACATGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGTACAGATGTTAGTCACTGGATACCAAAGCGAATTGCAGGTCCACTAGAGGGGCTTCAAGTCGCTTTAGTCACCTGTGGTCCATGGCACACAGCTTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGAACATTTGGTGTCCTAGGCCATGGGGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCCTATCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTCGTAGAGGTTATTGTGACACAATCCAGTGCAAGTGTGTCATCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAATCGCCTTGGACATGGAGACAAAGAGGCCCGGCTCGAACCAACTTGCGTACCTTCACTTATTGATTACAATTTTCATAGAATTGCTTGCGGGCACAGTTTGACAGTAGGCCTGACAACATCTGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGAAATCCCCAGTCTGACGGAAAGGTGCCCTGTTTGGTTGAAGACAAGCTTGCTGGAGATTCTGTTGAAGAAATTGCATGTGGAGCTTATCATGTTGCTGTTTTAACATCCAAAAATGAAGTTTATACGTGGGGGAAGGGTGCAAATGGGCGATTGGGTCATGGAGATGTTGAAGATAGGAAAACACCTACTTTGGTTGAAGCCTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGCAATCTGGTGCTGAGCAGTCTCAATGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCATTGTCATTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCTCTGGCTCCAAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTATGCAAAATTGAATAAGGTTACAGAATCTGGCAATAATAATCGGAGGAATGCTATGCCTCGTTTGTCTGGTGAAAACAAGGACAGATTAGAAAAGTCTGAGCTAAGATTGTCGAAGTCAGCAGTGCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCGCCTCACAAGCGCCGTCTTTGCTACAGCTGAAAGATGTTGTCTTGTCTACTGCTATTGATCTGAAACGCACAGTTCCTAGACCTGTTCTTACACAATCTGGAGTGAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCGAGTCCCCCTCGTTCTGCTACACCTATTCCAACAACATCAGGACTTTCCTTCTCAAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTATTGAACCAAGAAGTGCTGAAGTTACGTGGTCAGGTTGATACCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACCCAGGAAGCTATGGCACTGGCTGCTGAGGAATCTACCAAATCTAAGGCTGCAAAAGAAGTTATTAAGTCACTTACAGCACAGCTCAAAGATCTAGCTGAGAGGCTTCCTCCTGGTGTTTATGATGCTGAGAACATCAGACCAGTGTACCTGCCAAATGGTCTGGAGCCAAATGGCATCCACTATCCAGAGTTAAATGGGGAGCGTCACACCAGGGCTGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATAGGTCTTGAATCTTCTCTGATGAATAGAACAGAAGGGAATTTCCCTGGAAGCTATGGAACTAGTCTTTACCAGCAAAGCCGGGGGCTTGTGGCCTCTAATGGGACAGATGATTACCCAGATGCTAAATTGCCAAATGGAAGTGGTGTGATTCAGGCAAGCAGCAACAGTGTGTCAGATACTGCTGAGGGTAGGGATTCTGGGCATTTCCAAGATGATGAGAATGATTTGAGATCGAGGAATGCTGCATTGCCTGCTAATAGTAATCAAATTGAAGCAGAATGGATCGAACAGTATGAACCTGGTGTCTATATAACACTTGTTGCCCTGCGAGATGGAACGAGAGATCTAAAGAGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCACCAAGCAGAGACATGGTGGTCAGAGAACCGCGAGAAGGTATATGAAAGGTACAATGTTCGGAGCACAGACAAGTCTTCAAACCAAGCAGCACGTAGGGCAGAGGGTGCTGGTTCACCTGTTCTATAA 3411 0.445 MADLVSYRNADRDIEQALIALKKGAQLLKYGRKGKPKFCSFRLSNISVSGPHKAPFQSSIGLKFVIPHLCCVSISLISLARSYETQMPNTVQAVFQRYLRPEKDYLSFSLIYNHGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDSRDLTSSSPSESSVSVSQDISSPDISLSVPNTSPKSFQPENTLNFERSHAPSNPSNMQVKGSGSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGAEKNVSYLSPRADILLPRPLESNVVLDVLQIACGVKHAALVTRQGEIFTWGEESGGRLGHGVGKNVVQPRLVEALSSTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKVPCLVEDKLAGDSVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWQSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVTESGNNNRRNAMPRLSGENKDRLEKSELRLSKSAVPSNMDLIKQLDSKAAKQGKKADTFSLVRASQAPSLLQLKDVVLSTAIDLKRTVPRPVLTQSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRGQVDTLRQRCELQELELQRSAKKTQEAMALAAEESTKSKAAKEVIKSLTAQLKDLAERLPPGVYDAENIRPVYLPNGLEPNGIHYPELNGERHTRAESISGSSLASIGLESSLMNRTEGNFPGSYGTSLYQQSRGLVASNGTDDYPDAKLPNGSGVIQASSNSVSDTAEGRDSGHFQDDENDLRSRNAALPANSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSTDKSSNQAARRAEGAGSPVL 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00128 1136 FunFam PH, RCC1 and FYVE domains-containing protein 1 475 646 - -
Sebi85g00128 1136 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 301 311 IPR000408 -
Sebi85g00128 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 253 314 IPR000408 -
Sebi85g00128 1136 SUPERFAMILY RCC1/BLIP-II 252 642 IPR009091 -
Sebi85g00128 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Sebi85g00128 1136 MobiDBLite consensus disorder prediction 996 1041 - -
Sebi85g00128 1136 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 88 912 - -
Sebi85g00128 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 537 588 IPR000408 -
Sebi85g00128 1136 Pfam Transcription factor regulating root and shoot growth via Pin3 1057 1112 IPR013591 -
Sebi85g00128 1136 SUPERFAMILY PH domain-like 13 140 - -
Sebi85g00128 1136 SMART fyve_4 639 708 IPR000306 GO:0046872
Sebi85g00128 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 422 473 IPR000408 -
Sebi85g00128 1136 Pfam FYVE zinc finger 641 707 IPR000306 GO:0046872
Sebi85g00128 1136 CDD PH_PLC_plant-like 12 141 - -
Sebi85g00128 1136 FunFam Putative E3 ubiquitin-protein ligase HERC1 647 715 - -
Sebi85g00128 1136 MobiDBLite consensus disorder prediction 1116 1136 - -
Sebi85g00128 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 485 536 IPR000408 -
Sebi85g00128 1136 Coils Coil 897 917 - -
Sebi85g00128 1136 Gene3D - 200 478 IPR009091 -
Sebi85g00128 1136 FunFam PH, RCC1 and FYVE domains-containing protein 1 224 474 - -
Sebi85g00128 1136 MobiDBLite consensus disorder prediction 713 732 - -
Sebi85g00128 1136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 718 IPR013083 -
Sebi85g00128 1136 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 408 418 IPR000408 -
Sebi85g00128 1136 MobiDBLite consensus disorder prediction 802 819 - -
Sebi85g00128 1136 Pfam Transcription factor BRX N-terminal domain 892 927 IPR027988 -
Sebi85g00128 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 590 637 IPR000408 -
Sebi85g00128 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 484 531 IPR000408 -
Sebi85g00128 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 536 585 IPR000408 -
Sebi85g00128 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 315 363 IPR000408 -
Sebi85g00128 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 367 418 IPR000408 -
Sebi85g00128 1136 Pfam Regulator of chromosome condensation (RCC1) repeat 422 470 IPR000408 -
Sebi85g00128 1136 ProSiteProfiles BRX domain profile. 1058 1113 IPR013591 -
Sebi85g00128 1136 PRINTS Chromosome condensation regulator RCC1 signature 298 311 IPR000408 -
Sebi85g00128 1136 PRINTS Chromosome condensation regulator RCC1 signature 367 383 IPR000408 -
Sebi85g00128 1136 PRINTS Chromosome condensation regulator RCC1 signature 584 605 IPR000408 -
Sebi85g00128 1136 PRINTS Chromosome condensation regulator RCC1 signature 424 438 IPR000408 -
Sebi85g00128 1136 PRINTS Chromosome condensation regulator RCC1 signature 526 544 IPR000408 -
Sebi85g00128 1136 PRINTS Chromosome condensation regulator RCC1 signature 408 424 IPR000408 -
Sebi85g00128 1136 PRINTS Chromosome condensation regulator RCC1 signature 317 333 IPR000408 -
Sebi85g00128 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 589 640 IPR000408 -
Sebi85g00128 1136 MobiDBLite consensus disorder prediction 1013 1029 - -
Sebi85g00128 1136 MobiDBLite consensus disorder prediction 164 224 - -
Sebi85g00128 1136 MobiDBLite consensus disorder prediction 802 833 - -
Sebi85g00128 1136 Coils Coil 841 882 - -
Sebi85g00128 1136 Gene3D - 479 646 IPR009091 -
Sebi85g00128 1136 CDD FYVE_like_SF 650 703 - -
Sebi85g00128 1136 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 460 470 IPR000408 -
Sebi85g00128 1136 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 421 IPR000408 -
Sebi85g00128 1136 Gene3D - 13 146 IPR011993 -
Sebi85g00128 1136 SUPERFAMILY FYVE/PHD zinc finger 641 715 IPR011011 -
Sebi85g00128 1136 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 645 707 IPR017455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00128 Sebi-Chr85 2112768 2120802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00128 1059 1129 Major Intrinsic Protein MIP AT1G31880 46.479 1.43e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00128 - - gmx:100783270 1909.03