Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00107 ATGTCCTTCCGCAGCATAGTTCGCGATGTAAGGGATGGATTTGGAAGCCTATCAAGAAGGAGTTTTGAGGTGAGGCTTCCTGGCCATCATAGGGGCAAGTCACATAGTTCAGTCCATGAGTTGCAAGAGCAGCCTCCAGTTATACAGAACAGTAGATGGGCTAGCCTTCCCCCTGAGCTTCTCCGCGATGTTATTAAGAGATTGGAAGCAAATGAAAGTACGTGGCCTGGTCGAAAGCATGTGGTTGCATGTGCTGCCGTGTGCAAGTCATGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAGATTACTTTCCCTGTTTCCCTGAAGCAGCCTGGGTATAGGGATGGGCCAATCCAGTGTTTCATCAAGAGAGACAAATCTAAACTGACATACCATCTCTTCCTTTGTCTTAGTCCTGGCAAAATGGAGTTTGATAGCATTCTGTGGAAAGGCGATGATGCCACTTCTTGTATGCGGTTTACAAGTGGTCCTATCATCCTTTTCAACTCCTTGCTTGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAACGGACCAGAAGAACAACTTGCACAGAGTATATTATATCAATGGATGCAGATAACATATCAAGGTCTAGTAGCACTTATATTGGAAAACTGAGGTCTAATTTTCTTGGCACCAAGTTCATAATTTATGATACGCAACCTCCCTACAATAATGCTCAGCTGTCTCCACCAGGCCGCAGCCGTAGGTTTTATTCAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGTAGCTACAATATTGCCCAGGTCACCTATGAGTTGAATGTCCTCGGTACTAGGGGGCCACGGAGGATGAATTGCACAATGTACTCAATCCCTGCATCAGCCCTTGAGCCTGGTGGCGCTGTCCCAGGCCAGCCAGAGCTCCTTTCACGCCCCCTCGAGGATTCTTTCCGCAGTATATCCTTTGCAAAATCAATTGACAATTCAACTGAGTTCAGCAGCTCTAGGTTCTCAGACATACTTGGAGCTGGCAATGAAGAGGAGGAGGGAAAGGAGAGACCACTAGTTCTTAAGAACAAGTCTCCAAGATGGCATGAACAGCTGCAATGTTGGTGCCTAAACTTTAGGGGAAGGGTTACAGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCTGCAACACAACCTGCAGCAGCTGGTGCTCCTACAGGAACAGGTCCTGCACCATCTCAGCCAACACAGCCTGACCATGACAAGATTATTCTTCAGTTTGGAAAGGTTGGCAAGGATATGTTCACAATGGACTATAGATACCCTCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAATTGGCATGTGAATAG 1383 0.4606 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRGKSHSSVHELQEQPPVIQNSRWASLPPELLRDVIKRLEANESTWPGRKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPGKMEFDSILWKGDDATSCMRFTSGPIILFNSLLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSIPASALEPGGAVPGQPELLSRPLEDSFRSISFAKSIDNSTEFSSSRFSDILGAGNEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAAGAPTGTGPAPSQPTQPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00107 460 ProSitePatterns Tub family signature 2. 445 460 IPR018066 -
Sebi85g00107 460 ProSitePatterns Tub family signature 1. 376 389 IPR018066 -
Sebi85g00107 460 Gene3D - 48 101 - -
Sebi85g00107 460 SUPERFAMILY Tubby C-terminal domain-like 102 460 IPR025659 -
Sebi85g00107 460 Pfam F-box domain 53 100 IPR001810 GO:0005515
Sebi85g00107 460 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Sebi85g00107 460 CDD F-box_AtTLP-like 53 97 - -
Sebi85g00107 460 FunFam Tubby-like F-box protein 48 101 - -
Sebi85g00107 460 PANTHER TUBBY-RELATED 33 458 - -
Sebi85g00107 460 Pfam Tub family 114 148 IPR000007 -
Sebi85g00107 460 Pfam Tub family 179 455 IPR000007 -
Sebi85g00107 460 PRINTS Tubby superfamily signature 358 375 IPR000007 -
Sebi85g00107 460 PRINTS Tubby superfamily signature 417 436 IPR000007 -
Sebi85g00107 460 PRINTS Tubby superfamily signature 376 392 IPR000007 -
Sebi85g00107 460 PRINTS Tubby superfamily signature 264 291 IPR000007 -
Sebi85g00107 460 PRINTS Tubby superfamily signature 215 239 IPR000007 -
Sebi85g00107 460 PRINTS Tubby superfamily signature 438 460 IPR000007 -
Sebi85g00107 460 PRINTS Tubby superfamily signature 199 215 IPR000007 -
Sebi85g00107 460 Gene3D Tubby Protein; Chain A 112 454 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00107 Sebi-Chr85 1567557 1569921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00107 1 460 TUB Transcription Factor Family AT1G76900 65.440 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi85g00107 Tub 9.5e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00107 K19600 - gmx:100817532 763.066