Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00096 ATGGATGAGGCAGCAGCAGACTGGCATAAGAAGCAGAAGGAGGAAGATATTGCTATATGTGAATGCAGGTATAATGCTGATGACCCTGATAGTGCATGTGGGGATGGGTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGTCCTTGTGGTATCTTTTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACGAAGTTATTTAAAACTGAAGGCCGTGGGTGGGGTCTTTTAGCTGATGAGGATATTAAGGCTGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAGATTCAAGGTCTTAAGGATGCATTTATCATTTCCCTTAATGCATCAGAATCTATTGATGCAACCAGAAAAGGAAGCCTTGCCAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACAAGGAAATGGAATGTCTTGGGGGAAATAAGAGTTGGAATATTTGCAAAGCATGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTATGGAGGTGCAAAGGTTCGCTGCCTTTGTGGTGCACTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGCAAACCATGAGCTTTTAAGTTCCAACAATAGCTTGAAAGGTGATGGTCGGGAGGATACTTATCTATGGGAAGACGATGATGACAGGTACTCTGTTGAGAAAATTCCTGTATATGACTCTGCAGAAGATGAACTGGTGTTAAATGTTAATGGACAAACCGAACATTCCATGGATGTTATGCTGCTTAAAGCCGAGCAACTGTCGGAGTCCACTACTTTTAATGTTCAGCAAGTTGATTCAGTTCAGATGAAGGGTTTAGATGTCAAGAAGATTAGAACTGAAATAGTAGGTGAGGATATGAAGCTGTACTCCCAAGATACGGAACAGTCCCTTTCACAAAAGAATGCAATGATATCACGTATCCAAAGTAATGATGCAGGCAGAAACTATCGCATTGGATGTAGGTCCATGTCTACCAAAAGATCAAGGGCATATAATGGTGGAAGGTTTAAAAATCTCATACAGAAGAAAATTGATGCAAAGTTTGCCGCTGGCCTCTTAGCATCAAAGGAAGCACAAGAGGAGATTTTAGATTATGAGAAAAGAAAAGATGACGCTACATCTTCTCTTGATTCCTTATACAATGAAATACGGCCTGCCATTGAAGAGCATGAGAGGGATACCCAAGATAGTGTCTCGACAACGGTAGCAGAGAAGTGGATACAGGCTTGCTGCCAAAAATTGAAAGCAGAGTTTGACCTTTACTTGTCAATTGTAAAAAATGTTGCTTGCACTGCTCAAAAGGCACCTGGCCAAGCAAAGCCTACTGAAGTAGATAACGAAAACGAAACTAAACCTATGACAGATTGA 1455 0.4041 MDEAAADWHKKQKEEDIAICECRYNADDPDSACGDGCLNVLTSTECTPGYCPCGIFCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQAYEIQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWYGGAKVRCLCGALKCSGFLGAKSRGFQANHELLSSNNSLKGDGREDTYLWEDDDDRYSVEKIPVYDSAEDELVLNVNGQTEHSMDVMLLKAEQLSESTTFNVQQVDSVQMKGLDVKKIRTEIVGEDMKLYSQDTEQSLSQKNAMISRIQSNDAGRNYRIGCRSMSTKRSRAYNGGRFKNLIQKKIDAKFAAGLLASKEAQEEILDYEKRKDDATSSLDSLYNEIRPAIEEHERDTQDSVSTTVAEKWIQACCQKLKAEFDLYLSIVKNVACTAQKAPGQAKPTEVDNENETKPMTD 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00096 484 ProSiteProfiles Post-SET domain profile. 192 208 IPR003616 -
Sebi85g00096 484 FunFam Histone-lysine N-methyltransferase 2 220 - -
Sebi85g00096 484 MobiDBLite consensus disorder prediction 463 484 - -
Sebi85g00096 484 PANTHER SET DOMAIN PROTEINS 10 469 - -
Sebi85g00096 484 SMART shorttest3 15 67 IPR006560 GO:0005634|GO:0042054
Sebi85g00096 484 Gene3D SET domain 2 224 IPR046341 -
Sebi85g00096 484 Pfam AWS domain 27 65 IPR006560 GO:0005634|GO:0042054
Sebi85g00096 484 Coils Coil 384 411 - -
Sebi85g00096 484 ProSiteProfiles AWS domain profile. 15 66 IPR006560 GO:0005634|GO:0042054
Sebi85g00096 484 Pfam SET domain 79 185 IPR001214 GO:0005515
Sebi85g00096 484 ProSiteProfiles SET domain profile. 68 185 IPR001214 GO:0005515
Sebi85g00096 484 SMART set_7 68 191 IPR001214 GO:0005515
Sebi85g00096 484 SUPERFAMILY SET domain 18 205 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00096 Sebi-Chr85 1328587 1340842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00096 50 207 C2H2 Transcription Factor Family AT2G23740 34.807 6.07e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi85g00096 SET 3.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00096 - - gmx:100775294 798.119