Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00079 ATGGAGCATACACCAGAACTTAGATGGCTATGCCACACCATTGACACTACCATTAGCATAGCACCAAAAGTACAGGAACAGCTGCACAGTCAACATCAACAGAAGCCTGGCTTTGGCTCTACCATTTGCAAGTACTTTCTGATAGAAGTCACTTGTCTCTCACCTGATGGACAAGCCCTTCTTTCTCTTCTGTCTGCAGCTGGTCCTGCTGCAAAATCATCACCTTCTGTGCTATCCTCATGGAATCCATCAAGCTCAACACCATGTTCATGGAAGGGCATTACTTGCTCCCCACAAGGCTCTTTGATATCTCTGCAGCAGTTTAGGATTGGGGGTAACCCATATCTCACTGGACAAATCCCTTCACAGTTAGGCCTGCTCACCAATCTCACAACATTTGGTGCAGCTGCCACTGGACTTTCTGGTGCCATTCCCTCTTCATTTGGGAACTTGATCAATCTCCAAACATTAGCACTTTATGATACTGAAATTTCTGGTTCTTTACCACCAGAACTTGGGTTGTGTTCTGAGTTGAGAAATATTTATTTGCACATGAATAAGCTCACTGGCACTATCCCTCCTCAATTAGGCAAGTTGCAAAAACTTACAAGCTTGCTTCTTTGGGGAAATGCATTATCTGGGCCAATACCAGCTGAGCTTTCCAACTGCTCATCACTTGTGATATTTGATGTCTCTTCTAATGACCTCTCTGGTGAAATACCTGGGGACTTTGGGAAGCTAGTGGTTCTGCAACAGCTTCATCTATCAGACAATTCACTCTCAGTATCTGGAACCATACCATCCTCTTTTGGAAACTGCACAGAACTTTATGCACTTGACCTTTCAAGGAACAAGCTTACAGGTTTTATCCCAGATGAAATTTTCAACTTGAAGAAGCTGAGTAAGCTTCTGCTTCTGGGAAATTCATTAACAGGAAGGTTGCCACCAAGTGTTGCAAACTGTCAGTCTCTAGTGAGGTTGAGGGTTGGAGAGAACCAACTTTCAGGACAGATTCCTAAAGAGATAGGCCAATTGCAGAATCTAGTGTTTCTTGACTTGTACATGAATCATTTCTCTGGAAGCTTACCAGTGGAGATTGCCAACATCACAGTTCTTGAGCTTTTAGATGTGCATAACAACTACCTTACTGGGGAAATTCCATCTGTGATTGGAGAACTTGAAAATTTGGAGCAGCTTGATCTCAGCCGAAATAGTTTGACAGGTGAAATTCCTTGGAGTTTTGGAAACTTCAGTTATTTGAACAAGCTCATCCTCAACAATAATTTGCTGACAGGATCAATCCCAAAATCCATTAAAAATTTGCAGAAGCTAACTCTATTAGATTTGAGTTATAACAGCCTCTCTGGTGGCATACCCTCTGAGATTGGTCATATTACAAGCTTAACCATTAGTTTGGACTTAAGCTCAAATGCATTCACAGGAGAAATCCCAGAATCATTGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCTCATAATTTGCTTTATGGAGGAATTAAGGTTCTTGGTTCTCTTACTAGTCTCACTTCACTCAATATCTCCTACAACAACTTCTCAGGTCCTATCCCTATAACTCCATTCTTCAGAACTCTATCTTCAAATTCATATCTTCAGAACTCCCATCTATGTCAGTCCATTGATGGAACTACATGTTCTTCAAGTCTGATCCGAAAAAATGGTTTAAAATCTGCAAAAACTGTAGCTTTGGTCATGTTTGTATCAGGAAGAGTAGAGACAATGTGTAAACATATTCAGTTCAAGCTTAGGAATGTGTTTGGATATCCAAAATATGGCTACTCCATGAACATAACAGAGAAGAGTGATGTCTACAGTTATGGAGTGGTTTTGCTAGAGATATTAAGTGGGCGTAGTGCTGTTGAATCCCATGTTGGAGATGGACAACACATAGTTGAATGGGTGAAGAGAAAGATGGGAAGCTTTGAACCAGCAGTATCAATACTAGATGCAAAGCTACAAGGACTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATTGCTATGTTTTGTGTGAACTCTTCCCCAGCAGAGCGCCCCACTATGAAGGAAGTGGTAGCACTACTAATGGAGGTGAAGAGCCAGCCTGAGGAAGTGGGGAAGAGTACCTCTCAACCTCTAATAAAGCAGTCCTCAACTCAAAGCTGA 2196 0.4162 MEHTPELRWLCHTIDTTISIAPKVQEQLHSQHQQKPGFGSTICKYFLIEVTCLSPDGQALLSLLSAAGPAAKSSPSVLSSWNPSSSTPCSWKGITCSPQGSLISLQQFRIGGNPYLTGQIPSQLGLLTNLTTFGAAATGLSGAIPSSFGNLINLQTLALYDTEISGSLPPELGLCSELRNIYLHMNKLTGTIPPQLGKLQKLTSLLLWGNALSGPIPAELSNCSSLVIFDVSSNDLSGEIPGDFGKLVVLQQLHLSDNSLSVSGTIPSSFGNCTELYALDLSRNKLTGFIPDEIFNLKKLSKLLLLGNSLTGRLPPSVANCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSLPVEIANITVLELLDVHNNYLTGEIPSVIGELENLEQLDLSRNSLTGEIPWSFGNFSYLNKLILNNNLLTGSIPKSIKNLQKLTLLDLSYNSLSGGIPSEIGHITSLTISLDLSSNAFTGEIPESLSALTQLQSLDLSHNLLYGGIKVLGSLTSLTSLNISYNNFSGPIPITPFFRTLSSNSYLQNSHLCQSIDGTTCSSSLIRKNGLKSAKTVALVMFVSGRVETMCKHIQFKLRNVFGYPKYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDAKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSQPEEVGKSTSQPLIKQSSTQS 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00079 731 Gene3D Transferase(Phosphotransferase) domain 1 589 727 - -
Sebi85g00079 731 MobiDBLite consensus disorder prediction 711 731 - -
Sebi85g00079 731 FunFam Predicted protein 191 292 - -
Sebi85g00079 731 Pfam Protein tyrosine and serine/threonine kinase 609 704 IPR001245 GO:0004672|GO:0006468
Sebi85g00079 731 PRINTS Leucine-rich repeat signature 490 503 - -
Sebi85g00079 731 PRINTS Leucine-rich repeat signature 396 409 - -
Sebi85g00079 731 SMART LRR_typ_2 151 175 IPR003591 -
Sebi85g00079 731 SMART LRR_typ_2 441 465 IPR003591 -
Sebi85g00079 731 SMART LRR_typ_2 345 368 IPR003591 -
Sebi85g00079 731 SMART LRR_typ_2 490 517 IPR003591 -
Sebi85g00079 731 SMART LRR_typ_2 393 416 IPR003591 -
Sebi85g00079 731 SMART LRR_typ_2 273 297 IPR003591 -
Sebi85g00079 731 SMART LRR_typ_2 247 272 IPR003591 -
Sebi85g00079 731 SMART LRR_typ_2 199 223 IPR003591 -
Sebi85g00079 731 FunFam Putative LRR receptor-like serine/threonine-protein kinase 293 561 - -
Sebi85g00079 731 SUPERFAMILY RNI-like 263 546 - -
Sebi85g00079 731 Pfam Leucine Rich Repeat 395 417 IPR001611 GO:0005515
Sebi85g00079 731 Pfam Leucine Rich Repeat 443 463 IPR001611 GO:0005515
Sebi85g00079 731 Pfam Leucine Rich repeat 513 528 IPR001611 GO:0005515
Sebi85g00079 731 MobiDBLite consensus disorder prediction 713 731 - -
Sebi85g00079 731 Gene3D Ribonuclease Inhibitor 55 219 IPR032675 -
Sebi85g00079 731 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 95 190 - -
Sebi85g00079 731 Gene3D Ribonuclease Inhibitor 312 561 IPR032675 -
Sebi85g00079 731 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 296 563 - -
Sebi85g00079 731 SUPERFAMILY L domain-like 83 340 - -
Sebi85g00079 731 Pfam Leucine rich repeat N-terminal domain 54 97 IPR013210 -
Sebi85g00079 731 Gene3D Ribonuclease Inhibitor 225 311 IPR032675 -
Sebi85g00079 731 SUPERFAMILY Protein kinase-like (PK-like) 603 713 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00079 Sebi-Chr85 1069431 1073387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00079 600 709 Receptor kinase-like Gene Family AT5G56040 42.857 1.92e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi85g00079 PK_Tyr_Ser-Thr 5.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00079 - - gmx:100819611 664.07