Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi85g00074 ATGGCTTCAACGATGGCTCAGACTGCGGCAGCGGTTGCTCCAGCGCCGGCTCCGGCGGCGGCATTGGGCGGAGGGCCATTTGCGAATGCGTCGCTTTACGTAGGCGATCTCGAGGGGAACGTGAACGAGGGGCAACTTTATGATCTGTTCAGCCAGGTCGCTCAGGTCGTCTCGATTAGGGTTTGCAGGGATCAGACCAAGCGATCCTCTCTCGGTTACGCTTACGTCAACTTCGCCAACTCTCAGGATGCGACCAATGCAATGGAACTTCTGAACTTCACTCCTCTGAATGGGAAACCCATTCGTATTATGTTTTCTCAACGGGATCCAAGCATTCGGAAAAGTGGATATGCCAATGTGTTCATTAAGAACCTGGACACATCGATTGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGCACTGTACTTTCTTGTAAGGTGGCTGCTGACAGCAATGGTCAGTCAAAAGGGCATGGTTTTGTACAGTTTGACAATGAAGGGGCTGCTCAGAATGCCATCAAACAGTTGAATGGCATGCTGATAAATGATAAACAAGTTTATGTTGGACTCTTTGTTAGGCACCAGGAAAGGGCTCAAGCAAATGGCTCACCAAAGTTCACTAATGTGTATGTGAAAAACTTCTCTGAAACATTTACTGAAGAGGACCTGAAGCAGCTATTCGGAGCCTGTGGTACGATCACTAGTGCAACTATTATGAAAGATGTGAATGGGAAGTCCAGATGTTTTGGGTTTGTGAATTTCCAGAGTCCAGATTCTGCAGCTGCTGCAGTTGAGAAGTTAAATGGAACTGCTGTCAATGATGACAAGGTTTTATATGTGGGGAGAGCTCAGAGGAAATCAGAAAGAGAGGCTGAGTTGAAAGCCAAATTTGAGCAGGAAAAAATTAGCAGATATGAGAAATTACAAGGTGCTAATTTGTACTTGAAAAATCTTGATGACAGCTTCAATGACGAAAAATTGAAGGATCTATTTTCTGAGTTTGGAACTATAACATCTTGCAAGGTGATGGTGGATTTACATGGCCATAGCAAGGGTTCTGGATTTGTGGCCTTTTCTACTTCTGAGGAAGCAAGTAAAGCCATGAATGAAATGAATGGAAAGTTGATTGGACGGAAGCCTTTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAAAGGAAGGCTCGTTTGCAGGCTCAATTTGCTCAAATCCGAGCACCTAGTGGAATGACACCTTTGCCAGCAGGAATTCCAGGATATCCAGGGGCAGCAAGACTTGCCCCTCAACAGTTGTATTTTGGTCAAGGCACACCTGGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAACAAATCTTGCCTGGAATGCGTCCTGGTGTTGCTCCAAATTTCATCATGCCGTACCACCTTCAGAGACAGGGTCAGCCTGGGCAGAGAATGGGTGTTCGACGAAATGGAAACCTCCAACCAGTGCAGCAGAACCAAATGCTGCATCGTAATTCCAACCAAGGATTTAGATATATGGGCAACGGTCGAAATGGCATGGATCCATCTGTAGTTCCTCAAGGTCTAGTGGGTCCTATGATGCCAATGCCCTTTGATGGTTCTGGAGTTACTGCAGCTCCTATGGATAATCAGCGTCCTGGGGTATCATCTACCACACTTGCCTCAGCTTTGGCTTCTGCTACCCCAGAAAACCAGCGTTTGATGTTGGGTGAGCATCTATATCCCCTTGTGGACCGTCTTACACCAAACCAACAAACAGCAAAGGTGACAGGGATGTTGCTGGAAATGGACCAGTCAGAGGTAATACATCTTATTGAATCTCCTGAGGATCTGAAGATAAAGGTGTCTGAGGCAATGCAGGTCCTTCGTGAAGCTGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGCTCGTTGTCATTGAATGAATGA 1944 0.465 MASTMAQTAAAVAPAPAPAAALGGGPFANASLYVGDLEGNVNEGQLYDLFSQVAQVVSIRVCRDQTKRSSLGYAYVNFANSQDATNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGTVLSCKVAADSNGQSKGHGFVQFDNEGAAQNAIKQLNGMLINDKQVYVGLFVRHQERAQANGSPKFTNVYVKNFSETFTEEDLKQLFGACGTITSATIMKDVNGKSRCFGFVNFQSPDSAAAAVEKLNGTAVNDDKVLYVGRAQRKSEREAELKAKFEQEKISRYEKLQGANLYLKNLDDSFNDEKLKDLFSEFGTITSCKVMVDLHGHSKGSGFVAFSTSEEASKAMNEMNGKLIGRKPLYVAVAQRKEERKARLQAQFAQIRAPSGMTPLPAGIPGYPGAARLAPQQLYFGQGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFIMPYHLQRQGQPGQRMGVRRNGNLQPVQQNQMLHRNSNQGFRYMGNGRNGMDPSVVPQGLVGPMMPMPFDGSGVTAAPMDNQRPGVSSTTLASALASATPENQRLMLGEHLYPLVDRLTPNQQTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAASGSEVGDQLGSLSLNE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi85g00074 647 Coils Coil 290 310 - -
Sebi85g00074 647 CDD RRM3_I_PABPs 208 288 - -
Sebi85g00074 647 Pfam Poly-adenylate binding protein, unique domain 562 627 IPR002004 GO:0003723
Sebi85g00074 647 FunFam Polyadenylate-binding protein 23 118 - -
Sebi85g00074 647 SMART rrm2_1 210 282 IPR003954 GO:0003676
Sebi85g00074 647 SMART rrm2_1 314 386 IPR003954 GO:0003676
Sebi85g00074 647 SMART rrm2_1 119 191 IPR003954 GO:0003676
Sebi85g00074 647 SMART rrm2_1 31 104 IPR003954 GO:0003676
Sebi85g00074 647 FunFam Polyadenylate-binding protein 550 633 - -
Sebi85g00074 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Sebi85g00074 647 CDD RRM4_I_PABPs 312 390 - -
Sebi85g00074 647 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 632 IPR002004 GO:0003723
Sebi85g00074 647 FunFam Polyadenylate-binding protein 199 295 - -
Sebi85g00074 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Sebi85g00074 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Sebi85g00074 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Sebi85g00074 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Sebi85g00074 647 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 628 IPR006515 GO:0003723
Sebi85g00074 647 Gene3D - 309 412 IPR012677 -
Sebi85g00074 647 SUPERFAMILY PABC (PABP) domain 496 632 IPR036053 GO:0003723
Sebi85g00074 647 SUPERFAMILY RNA-binding domain, RBD 208 394 IPR035979 GO:0003676
Sebi85g00074 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Sebi85g00074 647 PANTHER RNA BINDING PROTEIN 30 92 - -
Sebi85g00074 647 SMART rrm1_1 119 191 IPR000504 GO:0003723
Sebi85g00074 647 SMART rrm1_1 314 386 IPR000504 GO:0003723
Sebi85g00074 647 SMART rrm1_1 31 104 IPR000504 GO:0003723
Sebi85g00074 647 SMART rrm1_1 210 283 IPR000504 GO:0003723
Sebi85g00074 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Sebi85g00074 647 SMART poly_2 566 630 IPR002004 GO:0003723
Sebi85g00074 647 Gene3D - 552 632 - -
Sebi85g00074 647 CDD RRM2_I_PABPs 116 191 IPR045305 -
Sebi85g00074 647 FunFam Polyadenylate-binding protein 119 192 - -
Sebi85g00074 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Sebi85g00074 647 SUPERFAMILY RNA-binding domain, RBD 30 196 IPR035979 GO:0003676
Sebi85g00074 647 FunFam Polyadenylate-binding protein 296 401 - -
Sebi85g00074 647 Gene3D - 119 192 IPR012677 -
Sebi85g00074 647 Gene3D - 25 118 IPR012677 -
Sebi85g00074 647 Gene3D - 194 306 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi85g00074 Sebi-Chr85 1030002 1033831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi85g00074 29 641 Eukaryotic Initiation Factors Gene Family AT1G71770 57.870 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi85g00074 K13126 - gmx:100783163 1091.26